Solanum lycopersicum (tomato): 101264663
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Entry
101264663 CDS
T02665
Name
(RefSeq) double-strand break repair protein MRE11 isoform X1
KO
K10865
double-strand break repair protein MRE11
Organism
sly
Solanum lycopersicum (tomato)
Pathway
sly03440
Homologous recombination
sly03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
sly00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
101264663
03450 Non-homologous end-joining
101264663
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sly03032
]
101264663
03400 DNA repair and recombination proteins [BR:
sly03400
]
101264663
DNA replication proteins [BR:
sly03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
101264663
DNA repair and recombination proteins [BR:
sly03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
101264663
BRCA1-C complex
101264663
NHEJ (non-homologous end-joining)
MRX complex
101264663
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Mre11_DNA_bind
Metallophos
SPG48
Motif
Other DBs
NCBI-GeneID:
101264663
NCBI-ProteinID:
XP_004246548
LinkDB
All DBs
Position
9:complement(3206855..3220019)
Genome browser
AA seq
731 aa
AA seq
DB search
MDDTSRDEGSNTIRILVATDCHLGYMEKDEVRRHDSFQAFEEICSIAEKKQVDFVLLGGD
LFHENKPSRATLVKAIEILRRYCLNDQPVQFQVVSDQTVNFANLFGHVNYEDPHFNVGLP
VFSIHGNHDDPAGVDNLSAVDILSACNLVNYFGKMDLGGSGVGQIALHPILIRKGLTSVA
LYGLGNIRDERLNRMFQTPHAVQWMRPEAQEGCQVSDWFNILVLHQNRVKANPKNAINEH
FLPRFLDFIVWGHEHECLVDPQEVPGMGFHITQPGSSVATSLIEGESKQKHVLLLEIKGN
QYRPTKIPLNSVRPFEYTEVVLKDEPDIDPNDHSSILEHLDKVVKKLIERSSQKANNGSV
KLPLVRVKVDYSGFMTINPQRFGQKYVGKVANPQDILIFSKSSKKFGKEAKFDDSERLRP
EELNQQNIEALVAESNLKMEVLPVSDLDVALHNFVNKDEKLAFYSCVQYNLEETRSKIAR
DSDPVKFEEDDIILKVGECLEERVKQRTERNKDDQPFSFSGQSLEDIRGKSTGVGSAVSF
SDDEDGSMPSASKSTAGKGRKESSQSFRSSREASEVGKTSTRGRGRGRGRGRASNSLKQT
TLDASLGFRQSQRSASVAASASVRSIAADDENVESPSSDEDAKQDTTVIDESSDDDKTVQ
AKGRKRAAPRGRSRGSATAAKRGRKPDSSSSSLQRMLMDVNEDDDDDDDDMTKKENKPRP
RATRNYGALRR
NT seq
2196 nt
NT seq
+upstream
nt +downstream
nt
atggacgatacttcaagggatgaggggagcaacaccattaggatcctagtcgctacggac
tgtcacttgggctatatggagaaggatgaagtacgtaggcatgattcttttcaggcattt
gaagagatatgttcaatcgcggagaaaaaacaggtggactttgtgcttctcggtggtgat
ctgtttcatgagaataagccatccagggcaacactggtgaaagccattgagattcttcgc
cgctattgtctcaatgatcaaccggtgcaattccaagttgttagtgaccagacagtgaac
tttgctaacctatttggtcatgtaaattatgaagatcctcactttaatgtggggttgcct
gttttcagcattcatggcaatcacgatgatccagctggtgtggacaacctatctgcagtt
gacatcctttcggcatgcaatcttgtcaactattttggtaaaatggatctcggtggttct
ggtgttggacagatcgctctgcaccctattcttatcaggaagggtttaacatcagttgct
ctttatggtcttgggaatatcagagatgaacggttgaacagaatgtttcaaacaccacat
gctgtacaatggatgcgacctgaggctcaggaagggtgtcaagtgtcagactggttcaac
attttggtacttcaccaaaatagagtaaaggcaaatccaaaaaatgcaataaatgagcat
ttcctgcctcggtttctggattttattgtgtggggtcacgaacatgaatgcttagtggat
cctcaggaggttccaggtatggggtttcacattactcagccaggttcatctgttgcgaca
tcactgattgagggtgaatcaaaacaaaaacatgtacttctattagaaattaagggaaat
caatatcgtccaacaaagatacctctgaactcagtgcgtccttttgaatatactgaggtt
gtgctgaaggatgaacctgatattgatcctaatgatcacagttcgattcttgaacatttg
gataaagtagtcaaaaagttgatagaaagatctagtcaaaaggctaataatggatctgta
aagctccctttagttcgagtaaaggtagactactctgggtttatgactataaatcctcaa
aggtttggacaaaaatatgtggggaaggttgccaatccacaggatattctcatattctca
aaatcttcaaaaaagtttggcaaggaagctaaatttgatgattctgagcggcttcgccct
gaagaattgaatcagcaaaacattgaagctttagttgctgagagcaatttgaaaatggag
gtacttccagtcagcgatctggacgttgccctgcacaattttgttaacaaggatgagaaa
ttggctttttattcttgtgtacaatacaaccttgaggaaactcgaagcaaaatagctcgt
gattcagatccggtgaaattcgaagaagatgatataattttaaaagttggagagtgctta
gaggaacgtgtcaaacaaagaactgaaagaaataaagatgatcaacctttctcctttagt
ggacagtctttggaggatattagaggcaaaagtactggagtaggatctgcagtttcattc
agtgatgatgaggatggctctatgccctccgcctcaaagtctactgctggaaaaggaagg
aaagagtcatctcaatcttttagatcctctcgtgaagcttctgaagttggcaagacctct
acaaggggaaggggtaggggtagaggcagaggaagggcttccaatagcttgaagcagaca
acccttgatgcatctctgggattccgtcagtcacagagatctgcatcagttgccgcatct
gcgtcagtgcgaagtattgccgcagatgatgagaatgtggaatctccttcaagtgatgaa
gatgccaaacaggacactaccgttattgacgaaagctcagatgatgataagacggttcag
gccaaaggacgcaaaagggctgctccaaggggaaggagtagaggttcagcaacagcggct
aaaaggggaagaaaaccagatagctcctcatcttcacttcaaaggatgctcatggatgtt
aatgaagatgacgatgacgatgatgatgacatgacaaagaaagagaataaacctcgacct
cgggcaactaggaattatggtgctttaaggaggtga
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