Solanum lycopersicum (tomato): 101264757
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Entry
101264757 CDS
T02665
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 24
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
sly
Solanum lycopersicum (tomato)
Pathway
sly03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sly00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101264757
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sly03041
]
101264757
Enzymes [BR:
sly01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
101264757
Spliceosome [BR:
sly03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
101264757
Complex B
101264757
Complex C
U2 SnRNP specific factors
101264757
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
101264757
NCBI-ProteinID:
XP_004229381
UniProt:
A0A3Q7EHB2
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All DBs
Position
1:complement(74533355..74542909)
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AA seq
774 aa
AA seq
DB search
MSKRKFGFEGFGINRQTTYNFERNQAPQRLYVPPSSRSGGSHDNYEDTDLDNIEYDEHDA
VGGNNNDGGGGGGEDDEIDPLDAFMEGIHQEMKAAPPPKPKEKLDKYKDDVDDDPMESFL
RAKKDVGLQLAADALHAGYNSDEEVYAAAKAVDAGLVEYDSDDNPIVVDKKKIEPITALD
HSEIDYEPFNKDFYEEKPSISGMSDQEVNEYRTGLAIRVSGFDVPRPIKTFEDTGFSAEL
MKAISKQGYERPTPIQCQALPIVLSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKE
EGPIGVICAPTRELAHQIFVEAKKFSKSHGIRVSAVYGGMSKLDQYKELKAGCEIVVATP
GRLIDMIRKKAFTMLRATYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRK
VEKLAREILTDPVRVTVGEIGTANEDITQIVEVIPSDAEKLPWLLEKLPGLIDNGDVLVF
ASKKATVDEIESQLAQKGFRVAALHGDKDQVSRTETLQKFKSGIYHVLIATDVAARGLDI
KSLKSVVNYDIAKDMDMHVHRIGRTGRAGDKDGTAFTLITHKEARFAGELANSLVAAGQT
VSVELMDLAMKDGRFRSKRDARKGGGKRAKGRGGGNNKGVRGVDFGLGIGYNPESNNPLQ
SAAPSRSAAVNSLRTGMMSQFKSSFVAASSNSQNQGMNNTAGAFPNKKMVLQGFVSGGTI
GGNSNTPHISSTFTAATPGGYTSSQPARDGANQKSSESSKERSRERRRPSGWDR
NT seq
2325 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaagagaaaatttggattcgaaggatttggcattaatcggcaaacaacgtacaac
ttcgagcgaaatcaagctcctcagcgactgtatgttccgccatcctcacgttctggaggt
agccatgacaattacgaagataccgacttagataacattgagtacgatgaacacgacgct
gtcggagggaacaacaatgatggaggcggaggaggtggtgaagatgatgaaattgatcca
cttgatgcgtttatggaagggattcatcaagaaatgaaggctgcaccgcctcctaagcca
aaagagaagttggataagtataaagatgatgtagatgatgatccgatggagagttttctg
agagcgaagaaggatgtaggtttacaattggcggctgatgctcttcacgctggttataat
tccgacgaggaggtgtatgcagcagcaaaggctgttgatgcaggattagttgagtatgac
tccgacgataatcctattgttgttgataaaaagaagattgagccgattactgctctggat
catagtgagattgactatgagcctttcaacaaggatttttacgaggaaaagccttctatt
tcaggtatgagcgatcaggaagttaatgaatataggacaggcttggccattcgtgtatca
ggctttgatgtaccaaggccaattaagacatttgaagacactggtttttctgctgagttg
atgaaagctatcagtaaacagggatatgaaaggcctacgccaatacagtgtcaagcatta
ccaattgtgctctctgggagagatattattggtattgctaaaactgggtccggtaagact
gctgcctttgtgcttcctatgattgtccacatcatggatcagcctgaacttcagaaagaa
gaaggccccattggagttatttgtgcacccactagggaattagcacatcaaatatttgtg
gaggcaaagaaattctcgaaatcgcatggtatccgtgtgtctgcagtttatggaggaatg
tctaaattggatcaatacaaagaactaaaggctgggtgtgagattgttgttgctactcca
gggaggttgatagatatgatcagaaagaaggcatttacaatgttgagagcaacttatcta
gtgcttgatgaggcagatcggatgtttgaccttggttttgagcctcaaataaggtccatt
gttggtcaaattagacctgatcgccaaacattgctcttttcagcaactatgccccgcaaa
gttgagaagcttgccagagaaatattgacggatcctgtaagggttactgtgggtgagatt
ggcacggctaatgaggatattacacaaatagttgaagtgattccttcggatgctgaaaaa
ttgccttggcttctggagaagctccctggactgattgacaatggtgatgttcttgtcttt
gcttcgaaaaaggcaacagtggatgagattgaatctcaattggctcagaagggatttaga
gttgcagctctccatggtgacaaggatcaagtttctcgtacggagacgctgcaaaaattt
aaatctggcatatatcatgttctcattgcaactgatgttgctgctcgtggtcttgacatc
aaatcacttaagtcagtggtgaactatgatatagctaaagatatggacatgcatgttcac
agaattggtagaacaggtcgtgctggtgacaaggatggaacggccttcactcttattact
cataaggaagcacgttttgctggtgaactggcgaacagtttggttgctgctggtcaaact
gtgtctgtggaactaatggaccttgctatgaaggacggaaggtttcggtccaaaagggat
gcaaggaaaggaggtggaaaaagggccaaaggaaggggaggaggaaacaacaaaggtgta
cgaggtgtggattttggtctagggattggatacaatcctgaatcaaataaccctctccag
agcgctgctccaagccgttctgcagctgttaattccctgaggacaggcatgatgtcacaa
tttaaaagtagctttgttgctgcatcatcaaattctcaaaatcaagggatgaataacaca
gctggcgcgtttcccaacaagaaaatggtcttgcaaggctttgtctctggtgggactata
ggtggaaatagtaatactccccatattagttccacatttactgctgcaacacctggggga
tatacttctagtcagccagctagagatggagctaaccagaaaagttcagagagttcaaag
gagaggtccagagagagacggaggccttctggttgggatcgttga
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