Solanum lycopersicum (tomato): 101264881
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Entry
101264881 CDS
T02665
Name
(RefSeq) probable pectate lyase 13 isoform X1
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
sly
Solanum lycopersicum (tomato)
Pathway
sly00040
Pentose and glucuronate interconversions
sly01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
sly00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
101264881
Enzymes [BR:
sly01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
101264881
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Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
WSS_VP
Beta_helix
Motif
Other DBs
NCBI-GeneID:
101264881
NCBI-ProteinID:
XP_004250039
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Position
11:2992534..2999632
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AA seq
489 aa
AA seq
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MFSLICILLFCLLVSFFPQIIASFNLTLPHQHPYPEVVVQEVQRKVNESISRRQLWNTTM
NAITTQCETGNPIDDCWRCDPNWSKNRQRLADCAIGFGQNAIGGKNGKYYVVSDSSDLDT
VNPTQGTLRHAVIQEEPLWIIFSGDMFIKLKHELIVNSYKTIDGRGAKVHITGNGCITLQ
YISNVIIHNIHIYNCLPSGNTDIRSTPTHVGHRGRSDGDGISIFSSRNIWIDHCALSHCT
DGLIDAIMGSTGITISNSYFSHHDEVMLLGHDDSYSPDAGMQVTIAFNHFGVGLVQRMPR
CRRGYIHVVNNDFTEWQMYAIGGSANPTINSQGNRYTAPVDANAKEVTKRVETDEGEWSG
WNWRTDGDIMVNGAFFVPSGEGLSNQYAKASSVEPKSAAIIDQLTLNAGVFGATRDKSIS
ISYGGGTTTGASGSGGGGSTGAGDDSDFFGMMFGSGAPQKLSSTTHYTILLSLLIMLFLY
TNQLFLILL
NT seq
1470 nt
NT seq
+upstream
nt +downstream
nt
atgttttctcttatatgcattctcttgttttgtttgttagtatcttttttcccacaaatt
atagcttcctttaatctcacacttcctcatcaacatccttaccctgaagttgtggttcaa
gaagtacaaaggaaggtgaatgaatcgatttcgagaaggcaactatggaacaccaccatg
aatgccataactactcaatgtgaaaccggaaatccaatcgacgattgctggcgctgcgat
ccaaattggtcgaaaaaccggcagcgtttagccgattgcgctataggtttcggccagaac
gcaatcggaggtaaaaacggcaaatactacgtcgtttccgattcctcagatctcgacacc
gtaaatccaactcagggaacactccggcacgctgtaatccaggaagaaccactctggatc
atcttctccggcgatatgttcattaaattgaaacacgaactcatcgttaacagttacaaa
acaatcgacggccggggagcgaaagttcacatcaccggtaacggatgtataacgttgcag
tatattagcaatgtgattatacataatattcatatttacaattgtttaccgtctggaaat
actgacatacggtcgacgccgacgcacgtcggtcaccggggtagatcggacggcgacggg
atctcgatattttcgtcacggaatatatggattgatcattgtgctttatcgcattgtact
gatggcttaattgatgctattatggggtccactggtataacgatttctaatagctatttc
agtcaccatgatgaagttatgctattgggacatgatgatagttactcgcctgatgccgga
atgcaggtgacaatagcatttaatcattttggagtgggactagtacaaaggatgccaaga
tgtagaagaggatatatacatgtagtcaacaatgattttactgaatggcaaatgtatgca
attggaggaagtgctaatcctacaattaatagtcaaggcaatcgatatactgcacctgtc
gatgctaatgctaaagaggtgacaaagcgcgtggaaacggacgagggagagtggagtggg
tggaattggagaacagatggagatataatggtaaatggagcattttttgtgccatcaggt
gaaggactcagtaaccaatacgcgaaagcctcgagcgtggagcccaaatccgctgctatt
attgatcaactcactcttaatgctggtgtttttggtgccacaagggataaaagtataagt
atatcctatggaggagggaccaccaccggagctagcgggagtggcggtggagggtccacc
ggcgccggcgatgatagtgatttttttggaatgatgtttgggagcggcgcaccacaaaaa
ttatcatcaaccactcattatactatcttattatctcttttaattatgttatttttgtac
accaaccaattattcttaatcttactatag
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