Solanum lycopersicum (tomato): 101264940
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Entry
101264940 CDS
T02665
Symbol
SWI3C
Name
(RefSeq) SWI/SNF complex subunit SWI3C
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
sly
Solanum lycopersicum (tomato)
Pathway
sly03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
sly00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
101264940 (SWI3C)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sly03021
]
101264940 (SWI3C)
03036 Chromosome and associated proteins [BR:
sly03036
]
101264940 (SWI3C)
Transcription machinery [BR:
sly03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
101264940 (SWI3C)
Chromosome and associated proteins [BR:
sly03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
101264940 (SWI3C)
PBAF complex
101264940 (SWI3C)
GBAF(ncBAF) complex
101264940 (SWI3C)
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
Myb_DNA-bind_6
ZZ
DUF7685
Motif
Other DBs
NCBI-GeneID:
101264940
NCBI-ProteinID:
XP_004242041
UniProt:
A0A3Q7GUL8
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Position
6:complement(40536583..40555091)
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AA seq
791 aa
AA seq
DB search
MPASSSETRNRWRKRKREPLISRKSKNQHDDDGFEDEEDEEDIEQQEMEDEHQNPNNSVD
RSYSSVELVSESRDRISEFPLVVRRAVTRPHSSVLNIVATEKAGLSGESRQNGLVLENIS
YGQLQALSAVPADSHSLLTEERGGEGSGSGSYVITPPQILPGRGVIKHYGTAGRIHVVPM
HADWFSPNTVHRLERQVVPHFFSGKSAEHTPEKYMECRNCIVAKYMESPVKHLSVDDCHE
IVGGISADDVTRIARFLDHWGIINYCAVPPKDETQKDGTYLYEDTNGDLCVPAAGLKSID
SLVQFDKPKCRLKAKDIYPELERDCDDDSDFDNSIREILSEIRCNCCSRPVSLAHYQSQK
EMDILLCLDCFHEGRFIAGHSSLDFVKVSSMKDYGDLDGDTWTDQETLLLLEGMQLYNEN
WNQIAEHVGTKSKAQCILHFVRLPLDGAALDNIELPGASGPSSSKTGEDRNKSHSTLNGN
LAGPSTGNLDSDSKFPFENCGNPVMSLVAFLASAVGPRVAAACAHASLAALSKDDTLTAS
QNMTQMDGSTTNNGISVGRMPGKNESPHGDVGSSYQRKDDKAAGQGPWGQHDAGGTPLST
ESVRAAAKVGLAAAAVKSKLFADHEEREIQRLSANIVNHQLKRLELKLKQFAEVETLLMK
ECEQLERTRQRFFGERARIMTTQPGSVRVSRPMGVSGAGAAVVNNTGNSRQQVSGPPQQN
FIAGYGNNQPMHPQMSFMQQQGIYGFGPRLPLSAIHPSSSTPSMFNAPASSQPALSHSML
RPVSGTKTGLG
NT seq
2376 nt
NT seq
+upstream
nt +downstream
nt
atgccagcttcctcctcagagacgaggaatagatggaggaagagaaagcgggagccatta
atttcgaggaaatcgaagaaccaacatgatgatgacgggtttgaagatgaggaggatgag
gaagacattgaacagcaggagatggaagatgaacatcaaaaccctaacaattcagtggat
cgaagttactcttctgttgagttggtgtcagaaagtagggaccggattagtgagtttcct
ttggtagtgagacgagctgtgactcggcctcattcatctgtgctgaatattgtggcaaca
gagaaggctgggttgagtggggagagcagacagaatgggttggttttggagaacatatcg
tatgggcagcttcaggcgctttcagctgtgcctgcagatagtcactctttgttgactgag
gaaagaggcggggaaggtagtgggagtggttcatatgtcatcactcctccgcagatattg
ccggggcgtggtgttattaagcattatggtactgcaggtcgaatccatgttgtgccaatg
cacgcagattggttttcacctaataccgtgcacagattggaaagacaagtggtgccacat
tttttctctgggaagtcagctgaacatacacccgaaaaatacatggaatgtagaaattgt
attgttgcaaagtacatggagtctcctgtaaagcacttgtcagttgatgattgccatgaa
atagtaggtggtattagtgctgatgatgtaactcgaattgcaagatttcttgatcattgg
gggatcatcaactactgtgctgttcctcctaaagatgagactcaaaaagatggcacatat
ttgtatgaggacacaaacggtgatctctgtgttccagcagctggtttgaagtctattgac
agcttagtccaatttgacaagcctaaatgtcggctgaaggcgaaagatatttatcctgaa
cttgagcgtgactgcgatgacgactctgattttgacaactcaatccgagaaatcttgtct
gaaattagatgcaattgttgttctcggcctgtttcactagcgcattatcagtcacagaaa
gagatggatattctattgtgtttggattgcttccatgagggtaggtttattgctggtcac
tctagcttggattttgtcaaagtgagctctatgaaagattatggagatctagatggagat
acttggacggaccaggaaacactattgcttcttgagggaatgcaactctacaatgaaaac
tggaatcaaattgcagaacatgttggcaccaagtcaaaggcacagtgcatccttcatttt
gtccgcctgcctttggatggtgccgcattagacaatattgaacttccaggtgcatctggt
ccctctagttctaagacaggtgaagatcgtaataaatctcattcaactttgaatgggaat
cttgcaggaccaagcactggaaaccttgattctgatagcaaatttccatttgagaactgt
ggaaatccagtaatgtccctggttgcttttctggcatctgctgttggaccgagagttgct
gcagcatgtgcccatgcatccttggcagctttatccaaggatgatactttaactgcatca
cagaacatgactcagatggatggatccacaacaaataatgggatcagtgtaggaagaatg
cctggaaagaatgaaagtcctcatggagatgttggaagttcgtatcagcgaaaagatgat
aaggcagcaggacaaggtccatggggtcaacatgatgctggagggactccattatccact
gaaagtgtaagagctgctgctaaagttggtcttgcagctgcagctgtaaaatcaaagctt
tttgctgaccatgaagaacgtgagattcagcggttatctgcaaacatagtcaaccatcag
ttgaagaggttagagctgaagctgaagcagttcgctgaggtggagaccttgctaatgaaa
gaatgtgaacaattggagagaacaaggcaacgcttttttggagaacgtgctcggataatg
acaactcaacctggttcggtgcgtgtatcccgaccaatgggtgtgtctggtgctggtgca
gcagtggtcaataatacaggaaatagtaggcaacaagtttcaggtcctccacaacaaaat
tttattgctggatatggaaacaaccaaccgatgcaccctcaaatgtcatttatgcagcaa
cagggaatttatggatttgggcctcggctgccactctcagcgattcacccatcctcttca
acacccagcatgtttaatgcaccagcaagttcccagcccgctctcagtcattcaatgctt
agacctgtatctgggacaaaaacaggtttaggttga
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