Solanum lycopersicum (tomato): 101265017
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Entry
101265017 CDS
T02665
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1-like isoform X1
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
sly
Solanum lycopersicum (tomato)
Pathway
sly03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sly00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101265017
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sly03041
]
101265017
Enzymes [BR:
sly01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
101265017
Spliceosome [BR:
sly03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
101265017
Complex C
U4/U6.U5 tri-SnRNP related factors
101265017
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
AAA_22
DEAD
PWI
AAA_19
AAA_30
T2SSE
nSTAND3
Cas3-like_C_2
AAA_16
ABC_tran
SRP54
Flavi_DEAD
AAA_23
Motif
Other DBs
NCBI-GeneID:
101265017
NCBI-ProteinID:
XP_004236490
LinkDB
All DBs
Position
3:complement(61965942..61983839)
Genome browser
AA seq
1050 aa
AA seq
DB search
MGSELRMWVSDKLMSLLGYSQSTVVSYVLNLAKKASSAANLTSQLVDDMGMSSSSETRVF
AQEIFERVEQKKTGPNLYLQQEREAAMLARKQKTYSLLEADDEDDNIVGVESSSVPSQTR
KEDTRIKKFRKRVETHGDEDDEVVKDEEDDRRVRRRTSQDQDDSDNSESEEEILRDQRER
EELERHIRERDAAGTRKLAEPKLTRKEEEEAIRRADALEQDDIGSLRKVSRREYLKKREQ
KKLEELRDDLEDEQYLFEGVKLTEAEERELRYKKEIYELVKKRSEDTGDMDEYRIPDAYD
LEGGVNQEKRFSVASQRYRDPDAAEKMNPFAEQEAWEEHQIGKANLKFGSKDRKSRSDDY
QFVFEDQIEFIKAAVMDGVNVDQEPSTDSIEKTMANSAFEKLQEDRKTLPMYPYRDDLLQ
AVNDHQVLVIVGETGSGKTTQIPQYLHEAGYTKRGKIGCTQPRRVAAMSVAARVSQEMGV
KLGHEVGYSIRFEDCTSEKTILKYMTDGMLLREFLGEPDLASYSVIMVDEAHERTLSTDI
LFGLVKDISRFRPDLKLLISSATLDAEKFSDYFDCAPIFKIPGRRFPVEIHYTKAPEADY
LDAAVVTALQIHVTQPPGDGDILIFLTGQEEIETAEEIIKHRIKGLGTKIAELIICPIYA
NLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFSKMKSYNPRTGMESL
LVAPISKASANQRAGRSGRTGPGKCFRLYTAYNYMNDLEDNTVPEIQRTNLANVVLSLKS
LGIHDLLNFDFMDPPPAEALLKALELLFALSALNKLGELTKVGRRMAEFPLDPMLSKMIV
ASDKYKCSDEIISIAAMLSVGNSIFYRPKDKQVHADNARMNFHVGNVGDHIALLKVYSSW
RETNFSTQWCYENYIQVRSMKRARDIRDQLEGLLERVEIELTSNDNDYEAIKKAITSGFF
PHSAKLQKNGSYRTIKHPQTVNVHPSSGLAQVLPRWVVYHELVLTTKEYMRQVTELKPDW
LVEIAPHYYQLKDVEDSSSKKMPRGTGRAS
NT seq
3153 nt
NT seq
+upstream
nt +downstream
nt
atggggtctgaattaaggatgtgggtttcagacaaattgatgtctctcctggggtactca
cagtccacagttgtctcttatgttcttaatctggctaagaaagcttcatcagctgccaat
ctaacaagtcagcttgtagatgatatgggtatgtcatcctctagtgaaacaagagttttt
gctcaagagatttttgagagagttgaacaaaagaagacagggccaaatctatatttacaa
caagaaagggaggctgctatgttggcgaggaaacaaaagacgtattcacttttggaggct
gatgatgaagatgacaatattgtcggtgtggaaagtagttccgttccttctcagactagg
aaagaggatacccgtataaagaagttcaggaagagggttgagacccatggagacgaagat
gatgaggtagttaaggatgaggaggatgatagacgggttcggagacgaacatcccaggac
caagatgacagtgacaactctgagtcggaagaagaaatacttcgggaccaaagagagagg
gaggagttagaacgacatatcagagagcgagatgctgccgggactagaaagttggcagag
ccaaaattaacaaggaaggaggaagaagaagcaatcaggagggctgatgcattggagcaa
gatgacattggatctttaaggaaagtttcaaggcgagaatacttgaagaaaagggagcag
aagaagctagaggaactccgagacgatttagaagatgaacaatacttgtttgagggagtg
aagctgacagaagcagaggaacgtgagctaagatataagaaggaaatatatgaacttgtt
aagaaacgatcagaagataccggtgacatggacgagtataggatacctgatgcttatgat
cttgaaggtggtgtaaatcaggaaaagaggttttcggtggcttcgcagcgatacagggat
ccagatgctgctgaaaagatgaatccttttgctgaacaagaggcatgggaggaacatcag
attgggaaggcgaaccttaaatttgggtcaaaagatagaaagtcaagatctgatgactac
caatttgtgtttgaagaccaaattgagttcataaaggcagccgtaatggatggtgttaat
gttgaccaagagccttccactgattcaatagagaaaactatggctaattcagcatttgaa
aaactccaggaggataggaagaccctaccaatgtatccctacagggatgatttgctccaa
gctgttaatgatcatcaggttcttgttattgttggagagacgggctccgggaagaccacc
cagataccgcagtatctgcatgaggcgggatataccaaacgtgggaagattggatgtact
caacctcgtcgagttgctgcaatgagtgtggctgcacgtgtttctcaagaaatgggagtc
aaacttggccatgaggttggctactctattcggtttgaagactgcacctctgagaaaacg
attctgaaatatatgactgacgggatgctgttacgagaattccttggtgagcctgatcta
gcaagttatagtgtcatcatggtcgacgaggcacatgaaagaacactttcaacggacatt
ttgtttggcttggttaaggatatttctcgatttcggcctgatctgaagttgctaatatca
agtgctactctggatgcagagaagttcagtgattattttgactgtgctccaatttttaaa
attcctggaaggcggtttccagttgagatacactatacgaaagctccagaggctgattac
ttggacgctgcagtagtcaccgctcttcagatccatgtaactcaacccccaggtgatggt
gacatattaatctttttgactgggcaggaggagattgaaacagcagaggagatcattaag
caccggataaaaggcctggggacaaaaattgctgagctgataatttgcccaatatatgca
aatttgccaacagaattacaagccaagatatttgagcccactcctgaaggtgctcgtaag
gttgtcctggctacaaatattgctgaaacatcattgacaattgatgggattaagtatgtt
attgatccgggtttttctaagatgaagtcttacaaccctcggacgggaatggagtcatta
ttggttgctcctatatcaaaggcatctgcgaaccaacgtgctggtcgatctggaagaaca
ggtcctggaaaatgctttcggttatacactgcatataattacatgaatgatttggaagat
aacacagttccagaaatacaaaggaccaaccttgcaaatgtggtgctctctctcaagagc
cttgggattcatgacttgctaaattttgactttatggatcccccaccagcagaagctcta
ctcaaagcactggagttgctttttgcccttagtgcacttaacaagcttggcgagttgact
aaagttggtagaagaatggctgagtttcctctagatcccatgctgtccaagatgattgtt
gcctctgacaagtacaagtgctctgatgaaataataagtattgctgccatgctttctgtg
gggaattcaatcttttatcgtccaaaggacaaacaagtccatgcagataatgcacggatg
aattttcatgtgggtaatgtgggggatcatatcgcgctgctaaaggtttacagttcctgg
agggaaacaaacttttcaactcagtggtgctatgaaaattatatccaggtcagaagcatg
aagagagcaagggacatccgagatcaattggaaggcctgctagaaagggtggaaattgaa
ttgacttcaaatgataatgactatgaagctataaagaaggctataacatcaggatttttc
ccccactctgcaaaactacagaagaatggatcttatcgaactattaaacacccccagaca
gttaatgttcaccccagctcaggtttagcacaggtgcttcccagatgggttgtttaccat
gagctggtcctgacaactaaggagtacatgcggcaggttactgaacttaaaccagactgg
cttgtggaaatagctcctcactactatcagttaaaagatgtcgaagactctagctcgaag
aaaatgcctcgtggaactgggcgtgcatcttag
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