Solanum lycopersicum (tomato): 101265421
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Entry
101265421 CDS
T02665
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 20
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
sly
Solanum lycopersicum (tomato)
Pathway
sly03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sly00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101265421
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sly03041
]
101265421
03009 Ribosome biogenesis [BR:
sly03009
]
101265421
Enzymes [BR:
sly01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
101265421
Spliceosome [BR:
sly03041
]
Complex A
U1 snRNP components
U1 related factors
101265421
Complex B
101265421
Ribosome biogenesis [BR:
sly03009
]
Eukaryotic type
Pre-60S particles
Helicases
101265421
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
101265421
NCBI-ProteinID:
XP_004236255
LinkDB
All DBs
Position
3:59573821..59583001
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AA seq
651 aa
AA seq
DB search
MSYPNYDSRYGDSGSYRQRRSDLMGPQPSMYPRPMPGGGAASYGRGGPLPYGGPQAGGPP
PMDGGSRGGMGGSGRVGGGYQPFEGGFARGSDMGRFGGGGVDRVANGGMGERPGRFGAGA
SYSGGRSGGGGGRGGRGFDGGYSGGRGGGRFSSDGGRGSSGGRGGRHGRSRDDLDNLTLP
KQDFGNLVPFEKNFYVENHAVRAMTDQEVAHYRARRDITIEGQDVPRPIQMFHEANFPDY
CLEVISRLGFVEPTPIQSQGWPMALKGRDLIGIAETGSGKTLAYLLPALVHVSAQPRLAQ
GDGPIVLVLAPTRELAVQIQEEAVKFGSRANIRSTCIYGGAPKGPQIRDLRRGVEIVIAT
PGRLIDMLEAQHTNLKRVTYLVLDEADRMLDMGFEPQIRKLISQIRPDRQTLYWSATWPR
EVEALARQFLRNPYKVIIGSPELKANQSIRQVIEVVTDLEKYSRLIGLLKEVMDGSRILI
FVETKKGCDQVTRQLRMDGWPALSIHGDKSQDERDWVLADFKSGRSPIMIATDVAARGLD
VKDIKCVINYDFPSSLEDYIHRIGRTGRAGATGTAFTFFTHANAKFTRELIKILQQAGQI
VPPQLSALARSSGPSTGGSNFRSRGRGGFGNRGGQRSGSNVIPIGGSRRPW
NT seq
1956 nt
NT seq
+upstream
nt +downstream
nt
atgagctaccctaattacgactccagatacggtgattcaggctcctatcgacagcgacga
agtgacctaatgggtccgcagccttctatgtatccacggcctatgcccggtggaggtgcc
gctagctatggccgtggtgggccgcttccttatggaggtcctcaggcagggggtccaccg
cctatggatggtggttctagagggggtatgggtggatctggacgcgttggtggtgggtat
caaccttttgaaggtgggtttgcaagagggtcggatatgggcaggtttggaggtggagga
gttgacagagtcgctaatggtggtatgggggaacggcctgggagatttggtgctggggca
agctacagtggaggtaggagtggtggtggtggtgggagaggaggtaggggttttgatgga
ggctacagtggcggacgaggaggtggaaggtttagttcagatggaggacgtggtagtagt
ggcgggagaggaggtaggcatgggagatcgcgagatgatcttgacaaccttactcttcca
aagcaagactttggaaatttggtaccttttgagaagaatttttatgttgaaaatcatgct
gtgagggcaatgacggatcaggaggttgctcattatcgtgcacggcgtgacattaccatt
gaaggacaggatgtccctaggccaattcagatgttccatgaggcgaactttcctgattat
tgcctcgaggttatttcaagactaggatttgttgagccaacacctatccaatcacaagga
tggccaatggctctaaagggcagagacttaattggaattgctgaaaccggttctggaaag
actttggcatatttattgcctgctttggtccatgtcagcgcacagccccggttggcacaa
ggtgatggtccaattgtgctggtattagcacctacaagagaattagctgttcagattcaa
gaagaagctgtgaaatttggatcacgtgccaacataagaagcacttgcatatatggtggt
gccccaaaaggacctcaaatccgtgaccttagaagaggagttgaaattgtgatagcaacc
cccggtcggttaatagatatgctggaagctcaacatacaaacctgaagcgggtgacatat
cttgtattggacgaggctgatcgaatgctggatatggggtttgagcctcaaataaggaaa
ctaatttcccagattagaccagatagacaaaccttgtattggagtgccacttggcccagg
gaggttgaagcgctggctaggcagtttctacgtaatccctataaggtcatcattgggtct
ccagaattgaaagcaaatcaatctataaggcaagtcattgaagttgtcacagatttagag
aaatatagcaggttgattgggcttttgaaagaagtgatggatggaagccgaattctaata
tttgtggaaacaaaaaaaggatgtgatcaagtcaccagacaattgagaatggatggatgg
ccagctttatctatccatggtgataaaagccaggatgagagggattgggtcctggctgat
ttcaaaagtggaagaagtcccataatgattgccactgatgttgctgcacgtggtcttgat
gttaaggacataaagtgtgttatcaactatgatttcccttcaagtctcgaggattatatt
cataggattggcagaactggacgtgctggcgcaacagggactgcttttacatttttcact
cacgcaaatgccaagtttacgagagagcttatcaagatcctgcagcaggcaggacaaatt
gttccccctcaactttctgcattagctaggtctagtggtcctagcactggaggaagcaat
ttcaggtctagaggacgaggtggctttgggaaccgggggggacagagatctgggtctaat
gtaattcctattggcggttcaagaaggccttggtag
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