Solanum lycopersicum (tomato): 101265460
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Entry
101265460 CDS
T02665
Symbol
DCL3
Name
(RefSeq) endoribonuclease Dicer homolog 3a
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
sly
Solanum lycopersicum (tomato)
Brite
KEGG Orthology (KO) [BR:
sly00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
sly03036
]
101265460 (DCL3)
Chromosome and associated proteins [BR:
sly03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
101265460 (DCL3)
microRNA pathway
RISC loading complex
101265460 (DCL3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ribonuclease_3
Ribonucleas_3_3
Dicer_dimer
DEAD
Helicase_C
ResIII
PAZ
dsrm
SWI2_SNF2
DND1_DSRM
Motif
Other DBs
NCBI-GeneID:
101265460
NCBI-ProteinID:
NP_001289826
UniProt:
X4Y6L7
LinkDB
All DBs
Position
8:57619519..57668305
Genome browser
AA seq
1658 aa
AA seq
DB search
MEEEKQENPLKRNFEAFSSEAEKMDVEKKKIEEFIPREYQLKVFKVAMRRNTIAVLDTGA
GKTNIAVMMIREIGITLRNDDEKKLIVFLAPTVHLVHQQYEVIQHHTHLGVQEYYGAKGV
DEWNAESWKKETDDNDVLVMTPQIFLDALRKGYIKFDTVCFLILDECHRASGNHPYARIM
KEFYHLSRKRSKVFGMTASPVIRKGVSSSADCEEQISELESLLDSQVYTLESRVELDEFV
PSAKETCKFYDPIVFSNTELKAKLEFSWSKFDAALADLKLSLPSQYKDTDDIYKKLRKRL
SNCYAKILCCLENLGIICAYEAVKICLENVPNDKDENEILRTSSLQHRYFLEEALSIVQE
SMPQDCESLFDVGYDLSATLSMGHISSKLQVLLEIFQLLGKATQVRCLIFVERIITAKVI
ERVMKKMTWFSHFTIAYLTGTNTSVDALTRKAQKETLGSFLSGKVNLLFATDVVEEGIDV
PHCSSVIRFDLPKTVRSYVQSRGRARQTESQYILMLERGNKKQREQMFDIIRSEYSMTDT
AIKRDPDDSVVKPCLVKETKAYYVEATGASVTADSSVSVLTKYCEMLPGDKFFSPKPVFQ
YILSGELYRCKLTLPPNAALQTIVGPECRSSQLSRQLVCLDACKKLHQIGALNDHLLPFN
EKPPRGGSDVQDRKLGAGTTKLKELHGTACISALSGSWGNDPNGEVYQVYKMNFLCNIKE
VKYSSFILLLQSELDYDVGNVEVELFLVSKFVESSVSHCGKVHLDSQQVAKAKIFQELFF
NGLFGKLFIKSSCGRKFLLDTEKSLWEPSNMYLLLPLDPLDSSCEPYRVDWEAIESSVSV
VEFLKKNGWLSKEKSEAKRKNSLVDRTASFVEDIDQTDLIHFANMSISRSKIMDMVVVAI
HTGRIYSVLEAVANSSAESPFEVDSEATVAPFSSFADYFHKKYGIVLVYPGQPLLLLKQS
HNAYNLLVDFKKEGISCGPKSKDSTMVVKKPLNNVHMPPELLVCFDIRLDILKSFYLLPS
LMHRLASLMLASQLRKDISSHSGDLHISSSLILEALTTLRCNESFSMERLELLGDSVLKY
AVSCYLFLKYPKKHEGQLTNERSQAISNSALHKLGTNQHLQGYIRDGAFDPRRWTAPGQL
SLWLCPCEHGVETSQVPLDKKFLTEDPKEVVGKHCDRGHRWMGSKTISDCVEALIGAYYV
GGGFVAALKLMKWLGFKAELEPSLVEDAINTASLYSYTPKAKDIEDLELKLAYKFSIKGL
LLEAITHATVQELEAGYSYQRLEFLGDSVLDILVTWYLYQKHKDIDPGELTDLRSASVNN
DNFAYAAVRRNLHVHLQHHSGCLESEISLFVKSVSNSDSLQGNKAPKVLGDLVESIAGAV
LIDTKLNLDEVWKIFKPLLSPIVTPDKLELPPFRELIELCDSLGYFFKEHCVMKGDTVNA
ELRLQLIDDLLIAEGSGQTRKNAKAQAALKLLKNLEKKGISFKKKKEEASFVDVPQSLDF
DGDICIQANTSCPDMASRKKRKKVYLNNKTDEAQSVPSDCSTSSSYSNKDTQVIGPINMT
RGGPRISLFELCKKLQWPMPSFESTERTSKSLIECGEGSDKRKVYNTFASRISLTIPDYG
LIELTGDERADKKSSLDSAALHMLYELERQGKIAIGNQ
NT seq
4977 nt
NT seq
+upstream
nt +downstream
nt
atggaggaagagaagcaagaaaaccctttgaagagaaactttgaagcttttagtagtgaa
gctgaaaagatggatgtagagaagaagaagatagaggagtttatacccagagagtatcag
ttgaaggtgtttaaagtggctatgaggaggaacaccattgctgtactggatacaggggct
gggaagactaatatagcagtgatgatgattagagaaattgggataacgttgaggaatgat
gatgagaagaagttgattgtgttcttggcaccaactgttcatcttgttcatcagcaatat
gaggttatacaacatcatacacaccttggtgttcaagaatattatggggccaaaggagtt
gatgaatggaatgcagaatcctggaaaaaagaaactgatgataatgatgttttggttatg
acaccccaaattttcttggatgcactgagaaagggttacataaaatttgatacagtgtgc
tttctgatactagacgagtgccatcgtgccagtggtaaccatccctatgctaggattatg
aaggaattctatcatctctccagaaaaagatcaaaggtttttgggatgactgcttcccct
gtgattagaaaaggtgtttcatcttcagcagattgcgaggagcaaatatcagaacttgaa
agtcttcttgattcccaggtatatacactcgagagcagggtggagctggatgaatttgtt
ccctctgctaaggagacttgtaaattctatgatccaatagtgttttcaaatacagaatta
aaggcaaagttggaattttcatggtcaaagtttgatgctgcattagctgatttgaaactg
tcactgccaagtcagtacaaagatacagatgatatatataagaagcttcggaagagattg
tccaattgttatgcaaagatattgtgttgccttgaaaatctaggcatcatttgtgcttat
gaggctgttaaaatctgcttggaaaatgtgcctaatgacaaagatgaaaatgagattcta
aggacaagttctctacaacatagatacttcttggaggaggcattgtcaattgtccaggaa
tcaatgccacaagactgtgagagcctcttcgatgttggatatgacttgtcagcaactctg
tcaatgggccatatatcttcaaaactgcaagtgcttcttgaaatttttcaactccttggg
aaagccactcaagtacgctgtctcatttttgttgaaagaattataacagctaaggttatt
gaaagagttatgaagaaaatgacctggttttcacatttcacaatagcatatttgactgga
acaaacacatcggtcgatgctctgacacgaaaagcgcaaaaagaaaccttgggatctttt
ctctctggaaaggtcaatttattatttgccactgatgtggttgaggagggaattgatgtg
ccacactgttcctctgtaatacgatttgatttacccaagacagttcgtagttatgtccaa
tctaggggacgtgctcgtcagactgagtctcagtatatactaatgcttgagagaggaaac
aagaagcagagggagcagatgttcgatattatcaggagtgaatattctatgacagataca
gctataaagagagatcctgatgattctgtggtgaaaccttgtcttgtgaaggaaactaaa
gcatattatgtggaggcaactggagcatcagtaactgcagattctagtgtcagtgtcttg
actaaatattgtgaaatgctccctggagataaattcttctctccaaagccagtgtttcag
tacattttgtctggagagttgtaccggtgtaagttgacattacctccaaatgcagctctc
caaacgattgttggtccagaatgcaggagttctcaactatcaaggcagcttgtctgcttg
gatgcatgtaagaagctgcaccagattggtgctctcaatgaccatcttcttcctttcaat
gaaaaacctccccgaggtggctctgatgtgcaggacagaaaattaggcgcaggaacaaca
aagttgaaagaattacatgggacagcttgtattagtgcattatctgggtcatggggaaat
gatcctaatggagaagtatatcaagtgtataaaatgaacttcctttgcaacatcaaggaa
gttaaatattccagttttatccttttgcttcaatcagaacttgattacgatgtgggaaat
gtggaagtggagcttttcttagtttccaagtttgtcgaatcctctgtgtcgcattgtggg
aaagtacatttggattcccaacaggtggcaaaagcaaaaatattccaagaactattcttt
aatgggctgtttggtaaattatttattaaatcatcgtgtggaaggaaatttctgcttgat
acagaaaaatctttgtgggagccatcgaacatgtacttgcttctaccgctggatccttta
gattcaagttgtgaaccctacagagttgattgggaagcaattgaatcttctgtttcagtt
gtagaatttttgaaaaaaaatgggtggttaagcaaggagaaatctgaagctaaacggaag
aactccttagttgataggactgcatcatttgtggaagatattgatcaaaccgatttgatt
cactttgccaatatgtcaatctcaagaagcaagattatggacatggttgttgtggccatt
catactggaagaatttattctgttctggaggctgttgccaattcttccgcagagagcccc
ttcgaagttgattcagaagctactgtagccccgttctcatcttttgctgactacttccat
aaaaagtacgggattgttttagtgtatcctggacagcctttgttgctactgaagcaaagc
cataacgcatacaatcttctcgtggattttaaaaaggaaggtatttcatgtggaccgaaa
tcaaaagatagtacaatggtggttaaaaagccactgaataatgttcatatgccaccagaa
cttctggtctgttttgacattcggttagacatcttgaaatccttctacttgctaccatca
ttaatgcaccgcctggcgtccctgatgttggctagccagttgaggaaagatatatcaagc
cattcaggggacttacatatatcaagctcattgattctggaagctcttacaactctcaga
tgcaatgagagtttctccatggaacgtctggagttgcttggagattctgttctgaaatat
gctgttagttgttacctcttccttaaatatcccaagaagcatgaagggcagctaactaat
gaacgttcacaggctattagtaactcagccctccataaattgggaactaatcaacatttg
cagggttatatacgggatggcgcatttgatccacgccgatggactgctcctgggcagctt
tccctgtggctttgtccttgtgaacacggggttgaaacttcacaagtgcctttggacaag
aagtttctgactgaagatcccaaagaagtagttgggaagcactgtgatagaggacacaga
tggatgggttcaaaaactatatctgactgtgttgaagcgttaataggtgcatattacgtt
ggtggtgggtttgttgctgccctcaaattgatgaaatggcttggttttaaagctgagcta
gaaccttcattagtagaagatgcgatcaatactgcatctctttattcttatacccctaaa
gctaaagatattgaagaccttgagttgaagcttgcttataaattttctattaagggactg
cttttagaagctataacacacgctactgtgcaagagctggaggctgggtacagttatcag
aggcttgaatttcttggcgactcagtactggacattctcgttacctggtacctttaccag
aagcacaaagatattgatcctggggaactaacagatctgcgttctgcttctgtcaataat
gataatttcgcttatgctgctgtgagaaggaatcttcatgtccaccttcaacatcattct
ggatgtcttgaaagtgaaatatcattatttgtgaagtcagtctctaattccgattcactc
caaggaaacaaagccccaaaggtacttggagacttggtggagagtattgctggagcagta
cttattgataccaagcttaacctggatgaagtttggaagatcttcaagccactgttgtct
cccatcgtgactcctgataagcttgaactacctccattccgtgagctcatagaattatgt
gactcacttggctacttctttaaagaacattgtgtgatgaagggggataccgtaaatgct
gagcttaggttacagctgatagatgatctgctgatcgctgagggatctgggcaaactaga
aaaaatgcaaaggcgcaagcagctctgaagttactgaagaacttagagaaaaaaggaatt
tcatttaagaagaaaaaagaagaggccagctttgttgatgtgccacaatctttagacttt
gatggtgacatctgcatccaagcaaatacttcttgtcctgatatggcttcacgcaaaaag
cgaaagaaagtatatttgaataataagacggatgaagctcaatctgttcccagtgactgc
tccaccagttctagctattcaaataaggacacccaagtaattgggccaatcaacatgaca
aggggtggacctcgcatatcactctttgaactatgcaagaaactgcagtggccaatgcct
agttttgaatcaacagagcgtacatccaaatcacttattgaatgtggtgaaggctctgat
aaaaggaaggtttacaacacttttgcatctcgaatctctctgacaatacctgactatggt
ttgatagagcttaccggggatgaaagagctgataagaaaagctcacttgattcagcagca
cttcacatgttatatgagctagaacgacaggggaaaatagccattggaaatcaatga
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integrated database retrieval system
