Solanum lycopersicum (tomato): 101265892
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Entry
101265892 CDS
T02665
Name
(RefSeq) vacuolar protein sorting-associated protein 41 homolog
KO
K20184
vacuolar protein sorting-associated protein 41
Organism
sly
Solanum lycopersicum (tomato)
Pathway
sly04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
sly00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
101265892
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sly04131
]
101265892
Membrane trafficking [BR:
sly04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
101265892
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_Vps41
Beta-prop_Vps41
zf-RING_Vps41
Clathrin
WD40_WDHD1_1st
WD40_CDC20-Fz
WD40
WD40_Prp19
Beta-prop_HPS5
zf_RING_Vps8
WDR55
Beta-prop_EML_2
zf-RING_2
zf_RING_Vps8_fungal
WDR90_beta-prop_4th
EIF3I
Beta-prop_WDR90_POC16_2nd
PEP5_VPS11_N
Beta-prop_IP5PC_F
Beta-prop_TEP1_2nd
zf-HC5HC2H
Motif
Other DBs
NCBI-GeneID:
101265892
NCBI-ProteinID:
XP_004250993
LinkDB
All DBs
Position
11:57719729..57732337
Genome browser
AA seq
957 aa
AA seq
DB search
MSRKLSDKGIDGDDERDEEEEYSDEEEEDGEEDEYEPRLKYQRMGGSVQSLLSSDAATCI
SVAERMIALGTYSGAVHILDFLGNQVKEFAAHTAAVNDLCFDTEGEYIGSCSDDGSVIIN
SLFTNESMKFEYHRPMKAVALDPDYARKSSRRFVTGGLAGNLYLNAKKWMGYRDQVLHSG
EGPVHAVKWRTSLIAWANDAGVKVYDAANDQRITFIERPRGSPHPELLVPHIVWQDDTVL
VVGWGTSVKIASIKTNQNKGLNGSYKYITMSSLNQVDIVASFQTSYFISGIAPFGDSLVV
LAYIPAEEDGEKNFSSTIPSRQGNAQRPEVRVVTWNNDELATDALPVHGFEHYKAKDYSL
AHAPFSGSSYAGGQWAAGDEPLYYIVSPKDVIIAKPRDTEDHINWLLQHGWHEKALEAVE
ANQGRSELVDEVGSRYLDHLIVERKYGEAASLCPKLLRGSPSAWERWVFHFAHLRQLPVL
VPYIPTENPILRDTAYEVALVALATNPSFYKDLVSTVKSWPPGIYSTSPVISAIESQLNT
SSMTDHLKEALAELYVIEGQHDKAFALYADLMKPDLFDFIEKHNLHDAVREKVVQLMMVD
SKRAIPLLIQHRDFIYPPEVVSQLMAAKTKCDCRYLLHLYLHSLFEVNPHAGRDYHDMQV
ELYADYDPKMMLPFLRSSQHYTLEKAYDICVKRDLLKEQVFILGRMGNAKQALAIIINRV
GDIEEAIEFVSMQHDDELWDELIKQSLNKPEMVGVLLEHTVGNLDPLYIVNMLPNGLEIP
RLRDRLVKIVTDYRTETSLRHGCNDILKADCVNLLVKYYKEAKRAICLSEDVDQAHSKRN
QQRASHLGERVISMKSMEVKSKTRGGGRCCICFDPFSLQNVSIIAFFCCHAYHTTCLMES
TISIGGDKKEAGASSKGTASYFEFDNGSDDDDEEEDDEDASSGTPRMRCILCTTAAG
NT seq
2874 nt
NT seq
+upstream
nt +downstream
nt
atgtcacgaaagttatcggataaaggaatcgacggcgacgacgagagggacgaagaagaa
gaatattccgatgaagaagaagaggacggagaagaagatgaatatgaaccaaggctcaag
tatcagaggatgggaggcagtgtgcaatcgcttctttcaagcgatgctgctacgtgtatt
tccgtcgcggagagaatgattgcccttggtacatacagtggagccgttcacattttagat
tttctcggcaatcaggttaaagagtttgctgctcacactgctgcagtcaacgatctttgc
tttgacacagaaggtgaatacattggaagctgttctgatgatgggtctgtcataataaat
agtctttttactaatgagagtatgaaattcgagtatcatcgtccaatgaaggctgttgct
ttagacccagattatgcaagaaagtcttccagaagatttgtgaccggtggtttagctggt
aatttgtatcttaatgcgaagaagtggatgggctatcgggaccaggttctgcactctggt
gaaggtccagttcatgcagtgaagtggcggactagtctcattgcctgggcaaatgatgca
ggagttaaagtttatgatgctgccaatgatcagcgcataactttcattgaacgacctcgt
ggaagcccacaccctgaacttcttgtccctcatatagtttggcaggatgacactgttttg
gtcgttggatggggaacctcggtgaaaattgcatcgataaaaacaaaccagaacaaaggc
ttgaatgggtcatacaagtatataaccatgtctagtctgaatcaggtggatattgtggca
tcctttcaaaccagctatttcatttcaggaattgctccttttggtgattctttggttgtt
ctagcttatattcctgctgaagaagatggagagaagaactttagcagcactattccctcc
agacagggaaatgctcaaagaccagaagttcgtgttgtgacatggaataatgatgagctc
gctaccgatgctctccctgtacatggctttgagcattacaaggcgaaagattattcgctt
gctcatgctccattttcaggtagcagctatgcagggggtcagtgggctgctggtgatgaa
cccttatactacattgtgtccccaaaagatgtgattattgcgaagccaagggacacagaa
gatcatattaattggcttctccagcatggatggcatgagaaagctttagaagcagttgag
gccaatcagggaaggagtgagctcgttgatgaggtgggttcgagatacctcgatcatctg
attgtggaaaggaagtatggtgaagcggcatctctatgtccaaaattgttgcgaggatca
ccttccgcatgggaaagatgggttttccattttgcacatctgcgccaactgcctgtgttg
gtcccgtacatcccaacagaaaatccaatattgcgtgatacagcttatgaggtagctctt
gttgctttggcaacaaatccatctttttacaaggatctcgtatcaactgtcaaatcctgg
ccacctggcatttattctacatcgcctgttatctcagctatagaatctcagcttaatacc
tcatctatgactgatcacctcaaagaggctctagcagaattatatgtgattgagggacaa
catgataaagcttttgctctttatgcggatcttatgaagccggatctgtttgacttcatt
gaaaagcataatttgcatgatgctgtgcgtgaaaaggttgtccaactaatgatggttgac
agcaagcgtgctatacctttgttgatccagcatagggactttatatatccacccgaagtg
gtgtcacaacttatggctgcaaagactaagtgtgattgtcggtaccttttgcatttgtat
cttcattcactatttgaagtgaatcctcatgctggacgggattaccatgacatgcaggtc
gagctttatgctgactatgatccaaagatgatgcttccctttctcagaagtagtcagcat
tatacacttgagaaggcttatgatatctgcgtgaagagggatttattaaaggaacaagtt
ttcatccttggaagaatggggaatgcaaagcaggcccttgctattatcataaatagagtg
ggagatatagaagaggccatcgaatttgtaagcatgcaacatgatgatgaactctgggat
gagctgattaagcagagtcttaataagcctgaaatggttggtgtattgttggagcatact
gtagggaatcttgatccactttatattgtaaatatgttgcccaatggcttggaaatacct
cgtctgagagatcgtttggtcaaaattgtcactgattacagaacagaaacttctcttaga
catggatgtaatgacatactcaaggctgattgtgtcaacctgctagtcaaatactacaag
gaagcaaagcgtgcaatatgtttgagtgaggacgttgatcaagcacattccaaaagaaat
cagcagagggcttcacatttaggagagagagtcattagtatgaaatccatggaggttaag
tcaaaaaccagaggaggtggaaggtgttgcatatgttttgatccgttttctctacagaac
gtatcaattattgccttcttttgttgtcatgcctaccatacaacttgtctcatggagtcc
accatttccattggtggcgataaaaaagaggctggggcttcttccaagggcactgcgtca
tattttgaatttgataatggcagtgatgacgatgatgaagaagaagatgacgaagatgct
tcttcaggtacccctcggatgcgttgtattttgtgtactacagctgcaggttga
DBGET
integrated database retrieval system
