KEGG   Solanum lycopersicum (tomato): 101265940
Entry
101265940         CDS       T02665                                 
Name
(RefSeq) THO complex subunit 3
  KO
K12880  THO complex subunit 3
Organism
sly  Solanum lycopersicum (tomato)
Pathway
sly03013  Nucleocytoplasmic transport
sly03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:sly00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    101265940
  09122 Translation
   03013 Nucleocytoplasmic transport
    101265940
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sly03019]
    101265940
   03041 Spliceosome [BR:sly03041]
    101265940
Messenger RNA biogenesis [BR:sly03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     101265940
Spliceosome [BR:sly03041]
 Complex C
  Other components
   EJC/TREX
    101265940
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    101265940
SSDB
Motif
Pfam: Beta-prop_THOC3 Beta-prop_IFT122_1st Beta-prop_WDR5 WD40 WD40_CDC20-Fz WD40_Prp19 Beta-prop_WDR3_1st WD40_WDHD1_1st Beta-prop_EML_2 EIF3I ANAPC4_WD40 Beta-prop_CAF1B_HIR1 WD40_Gbeta WDR55 Beta-prop_WDR3_2nd Beta-prop_WDR36-Utp21_2nd Beta-prop_WDR19_1st Beta-prop_TEP1_2nd Beta-prop_NOL10_N Beta-prop_RIG_2nd Beta-prop_WDR36-Utp21_1st Beta-prop_Aladin Beta-prop_Vps41 Beta-prop_TEP1_C Beta-prop_WDR90_POC16_2nd DSE1_N WD40_MABP1-WDR62_2nd Beta-prop_WDR35_TULP_N Beta-prop_HPS5 Beta-prop_WDR75_1st eIF2A Beta-prop_EML WD40_RFWD3 NBCH_WD40 Beta-prop_IFT140_1st Beta-prop_EIPR1 Beta-prop_DCAF12 WD40_MABP1-WDR62_1st Tricorn_2nd TRM82_WD Beta-prop_NUP159_NUP214 Beta-prop_IFT80_2nd PAC11 WDR90_beta-prop_4th Beta-prop_WDR41 ASA1 Beta-prop_Nup120_160 Beta-prop_ACSF4 Beta-prop_WDR11_1st WD_LRWD1
Other DBs
NCBI-GeneID: 101265940
NCBI-ProteinID: XP_004244009
UniProt: A0A3Q7HIN8
LinkDB
Position
7:complement(70052606..70058366)
AA seq 313 aa
MAETIPFKNLHSREYQGHKKKVHSVAWNCSGTKLASGSVDQTARIWQIEPHGHGKVKDVE
LKGHTDSVDQLCWDPKHAELIATASGDKTVRLWDARSGKCSQQVELSGENINITYKPDGT
HIAVGNRDDELTILDVRKFKPIHKRKFNYEVNEIAWNTGGDMFFLTTGNGTVEVLAYPSL
QAVNTLNAHTAGCYCIAIDPLGRYFAVGSADSLVSLWSIKEMLCLRTFTKLEWPVRTISF
NHTGDYIASASEDLFIDIANVQSGRSVHQIPCRAAMNSVEWNPKHNLLAFAGDDKNKYQA
DEGVFRIFGFESA
NT seq 942 nt   +upstreamnt  +downstreamnt
atggcggaaacaatacccttcaaaaatcttcatagcagagagtaccagggacacaagaag
aaggtgcattcggtggcatggaactgcagtggcacgaaattagcttcaggttctgtggat
caaacagctcgtatttggcaaattgagcctcatggtcatggaaaggtaaaagatgttgaa
ttaaagggtcacaccgacagtgtggaccagttatgttgggatccaaaacatgcagaattg
atagctacagcatctggtgacaagacagttcgattatgggatgcccgtagtgggaaatgc
tcacagcaagttgaactcagtggggaaaatatcaatatcacttacaagcctgatgggaca
catatagctgttgggaacagggatgatgagctaacaatcttggatgttcgcaagtttaag
cctattcataagcgcaagtttaattatgaggtaaatgagattgcatggaacacgggtggc
gatatgttctttcttacaactggaaatggaactgtggaagtcttagcttatccgtctcta
caagctgttaacacgcttaatgctcacactgctggttgttactgcattgcaattgatcca
ctaggaagatattttgctgttggaagtgctgattcattggtcagcctttggagcatcaag
gagatgctatgtcttcgaacatttacaaaacttgagtggccagttcggacaataagtttc
aatcacacaggagactacattgcctctgctagtgaagatttgtttattgatattgctaat
gtccaatctggacggtcagttcaccaaattccatgtcgtgctgccatgaacagtgttgaa
tggaatccaaaacacaacttgcttgcctttgccggggatgataagaacaaataccaggct
gatgaaggtgtgtttcgcatatttggctttgagagcgcatag

DBGET integrated database retrieval system