Solanum lycopersicum (tomato): 101266027
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Entry
101266027 CDS
T02665
Name
(RefSeq) nuclear poly(A) polymerase 1
KO
K14376
poly(A) polymerase [EC:
2.7.7.19
]
Organism
sly
Solanum lycopersicum (tomato)
Pathway
sly03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sly00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
101266027
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sly03019
]
101266027
Enzymes [BR:
sly01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.19 polynucleotide adenylyltransferase
101266027
Messenger RNA biogenesis [BR:
sly03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Poly(A) addition factors
101266027
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PAP_NTPase
PAP_central
PAP_RNA-bind
NTP_transf_2
MTPAP-like_central
Nrap_D2
Motif
Other DBs
NCBI-GeneID:
101266027
NCBI-ProteinID:
XP_004238881
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All DBs
Position
5:3204216..3213292
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AA seq
682 aa
AA seq
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MSNTGYGISEPISTGGPSELDVVRNRELEKFLADAGLYESHEEAIKREEVLGRLDQIVKT
WVKNVCRAKGFNDDLVHEANAKIFTFGSYRLGVHGPGADIDTLCVGPRHAMREDFFGELH
RMLEEMPEIQELHPVPDARVPVMKFKLNGVSIDLLYANVALWVIPEDLDVSQESILQNVD
DQTVRSLNGCRVTDQVLHLVPNIQSFRTALRCMRLWAKRRGVYSNVTGFLGGINWALLVA
RICQLYPNAAPSMLVSRFFRVYSLWRWPNPVLLCPINEGSLGLAYWDPRRNFKDRQHLMP
IITPAYPCMNSSYNVSTSTLRVMMEEFLRGNEICEAIEANKASWGSLFEPFPFFEAYKNY
LRIDIATESDDDMRQWKGWVESRIRLLTLKIERDTVGVLQCHPHPGEFSDKSKPFHHSYF
MGLRKKEGASYQQGEQFDIRSTVEDFKRDVYAYSFWKSSMWINVCHVRRKDLPDFVFPGG
VRPAQPAKSESRSGSRSLGSAKTTSPDAASSRKRKHDEVVAGLSPKGSDASSPGEIRELK
HFEADTGDTSSTLPVAASGAAVTELTVMQSAKLTVGQQSEPHGVEDLGYDLELTNGAKHF
DGANGLQTEPPTPEQFVGAATSEEKDRIGGSSNNVLQSEGLEELEPIEPAPSSSIASAAF
EVPQKPLIRFNFTSLRKTTEST
NT seq
2049 nt
NT seq
+upstream
nt +downstream
nt
atgagtaacactggatatggaatatctgagccaatttcaactggtggaccctctgaattg
gatgttgttagaaaccgggaactggaaaagtttcttgcagatgcaggcttatatgaaagt
catgaagaggccattaaaagggaagaagtgctaggaagattagaccagattgtgaagacg
tgggtgaaaaatgtctgtcgtgctaaaggcttcaatgatgatctggtgcatgaggcaaat
gcaaaaatcttcacatttggctcatatcggcttggtgtacatggtcctggtgctgatata
gacacactatgtgtaggacctagacatgcgatgcgtgaggacttctttggtgaacttcat
agaatgcttgaagagatgcctgaaatacaagaacttcatcctgttcctgatgcgcgcgtt
cctgttatgaaattcaagctcaatggcgtttctatagaccttctgtatgcgaatgtagca
ctctgggttattcctgaggacttggatgtttctcaggagtctatactacagaatgtggat
gatcagactgttcgtagtcttaatggatgcagagtaacagatcaagttttgcatttagta
ccgaatattcagagtttccgcaccgcactgagatgcatgagattgtgggcaaaaaggcgt
ggagtttactcaaacgttacaggatttctaggcggtataaattgggcactgcttgttgct
aggatttgccagctttatcctaatgcagctcctagcatgttggtttctcgttttttcaga
gtctacagtttgtggcgctggccaaacccagttttactgtgtccaataaatgaaggatct
ctagggctggcctattgggatcctcggaggaatttcaaagataggcagcatctaatgccg
ataataactccagcatacccctgcatgaattcgagttacaatgtttcaacgagtaccttg
cgtgtcatgatggaagaattccttagagggaatgaaatttgtgaggcaatagaagctaac
aaagctagctggggaagtctatttgagcctttccctttctttgaagcctataaaaactac
ttgcgaatagacatagctacagaaagtgacgatgacatgaggcaatggaaaggatgggtt
gaatctaggatacgcctgcttactctaaagattgagagagatacagtcggtgtacttcag
tgccatccacatccgggggaattctcagataaatctaagccatttcaccattcttatttt
atgggattgcgcaaaaaagaaggtgcaagttatcaacaaggcgaacaatttgatataagg
tcgacagttgaggattttaagcgagatgtatatgcatattctttttggaaatctagcatg
tggattaatgtgtgtcatgtaagacgaaaggatcttcccgactttgtcttcccgggagga
gtacgtcctgctcagcctgcaaaaagtgaaagccgttcaggctcaagatcgcttggttct
gctaaaacaacttctccagatgctgcttctagcagaaagagaaaacatgacgaagttgtt
gcaggtcttagcccaaaaggcagtgatgccagctcaccaggtgaaattagggagttgaaa
cactttgaagccgatactggtgatacctcgagtacattgcctgtggctgcatctggtgca
gctgtaacggagttaacagtcatgcaatctgccaaactgactgtgggccagcaaagtgaa
ccccatggtgttgaagatcttgggtatgacctggagttgacaaatggagctaagcatttt
gatggggctaatgggctgcagacagagccccctacaccagagcaatttgttggggcagca
acatcagaggaaaaggacagaattggtggttctagcaataatgtcctgcaaagcgagggc
ttggaagaacttgagccaattgagccagcaccatcctccagcattgcatctgctgcattt
gaggttcctcagaagccgctcattaggttcaattttacttctttgcggaaaacaactgag
agcacatga
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