Solanum lycopersicum (tomato): 101266100
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Entry
101266100 CDS
T02665
Name
(RefSeq) heterogeneous nuclear ribonucleoprotein 1
KO
K14411
RNA-binding protein Musashi
Organism
sly
Solanum lycopersicum (tomato)
Pathway
sly03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sly00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
101266100
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sly03019
]
101266100
Messenger RNA biogenesis [BR:
sly03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
101266100
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_7
RRM_PARP14_3
Nup35_RRM_2
Motif
Other DBs
NCBI-GeneID:
101266100
NCBI-ProteinID:
XP_004251912
UniProt:
A0A3Q7J5L5
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Position
12:complement(6154997..6159862)
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AA seq
475 aa
AA seq
DB search
MMETDLGKLFIGGISWDTDEERLKEYFTSYGEVIEAVIMRDRNTGRARGFGFVVFANPAV
AERVVNEKHIIDGRTVEAKKAVPRDDQQIINRNNSSIHGSPGPGRTKKIFVGGLASTVTE
SDFKTYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEDAVDRALYKTYHDLNGKMIEVK
RAVPKELSPGPNRSPFNGFNYGLGRVNNFLNNYAQGYSLGSIGGYGVRMDGRFSPVASGR
TSFSQFSSPAYGMGVNLDPALSPTFAGASNFSNNLGYGRALNPYFTGNSSRYTTPIGYNT
GSNRGDSLLSSPTRNVWGNGGLNSSPGPGSSGSFLGSGTGGYGVFGNNGANWGSSAVSAP
VGSASGYGGRNVGFRNGGRSYGLGSGGLARSNAAGGVPTSFAASGGAYEGSYGDLYRSGS
MYGDSTWQTVSSDMEGSNTFGYGLENPADDSAKDSENYIGNYSIANRQSNRGIAA
NT seq
1428 nt
NT seq
+upstream
nt +downstream
nt
atgatggagacagatctcggtaagctatttattggtgggatatcttgggacacagatgaa
gaacgtcttaaagaatatttcacttcgtatggagaagtgattgaagctgtgatcatgaga
gatcgcaatactggtcgtgctcgtggttttggttttgttgtgtttgctaatcctgctgtt
gctgaaagagttgttaatgagaagcatatcatcgatgggaggacggttgaggcaaagaag
gctgttccgagggatgaccaacaaataataaatagaaacaatagcagcattcacggatct
ccaggtcctggacgcacaaaaaagatatttgtaggaggtttagcatctacggttactgag
agtgacttcaagacatactttgatcagtttggtacaattacagatgttgtagtgatgtat
gatcacaacactcagaggccaagaggctttggatttataacttatgattcagaggatgca
gtggatagggcattgtataagacgtatcatgatctaaatggtaaaatgatcgaggtgaag
cgcgctgttcctaaagagctgtctccggggcccaacaggagccctttcaatggattcaac
tatggacttggtagagtaaataactttctcaacaactatgctcaagggtatagtttaggt
tcgattggaggatatggggtcaggatggatggtagatttagtccagttgccagcggacgt
acaagtttctctcagttttcttctcctgcttatggaatgggtgtcaatttggacccagct
ttgagccccacctttgcaggagcttccaattttagcaacaatcttggttatgggcgggct
ctgaacccgtatttcactggcaactcaagcagatacactacacccattggatataacaca
ggcagcaatagaggtgattctttgcttagctcaccaaccaggaatgtatggggaaatggt
ggacttaacagttctccaggtcctggtagctccggttcatttttgggatccggaactggt
ggttatggggtctttgggaataatggtgccaattggggctcatcggctgtttctgctcca
gttggtagtgcttctggatatggtggtcggaatgttgggttcaggaatgggggaagaagt
tatgggctgggatctggaggacttgcaagaagcaatgcagcaggtggtgtcccaacttca
tttgctgcatcaggtggtgcttatgaggggtcttatggagatttatatcgcagtggctcc
atgtatggtgattcaacatggcaaactgtgtcttctgatatggagggctctaatacattt
ggatatggacttgaaaatccagcagacgattcagcgaaagactctgaaaattatattgga
aattatagtattgcaaatagacaatcgaatagaggaatcgcggcatag
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