Solanum lycopersicum (tomato): 101266210
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Entry
101266210 CDS
T02665
Name
(RefSeq) pre-mRNA splicing factor SR-like 1 isoform X1
KO
K12850
pre-mRNA-splicing factor 38B
Organism
sly
Solanum lycopersicum (tomato)
Pathway
sly03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sly00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101266210
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sly03041
]
101266210
Spliceosome [BR:
sly03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
101266210
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Paralog
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Motif
Pfam:
PRP38
DUF4060
Motif
Other DBs
NCBI-GeneID:
101266210
NCBI-ProteinID:
XP_004236682
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Position
4:5481536..5489662
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AA seq
444 aa
AA seq
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MAELKTSGRPIDQLLEKVLCMNILSSDYFRDLLRLKTYHEVIDEIYNQVDHVEPWMTGNC
RGPSTAFCLLYKFFTMKLTVKQMHGLLKHPDSPYIRAIGFLYLRYLGDFKTLWGWYEPYL
KDDEEFSPGSSGQMTTMGVYVRDLFLGQYYFDTLLPRIPVPVVRTAVASLEKMNLPTKLS
GSIGDSSRGSEETSRRPPSVKASLSVSFGQRAPHRASTRDSSPIRRTIAPPSYDKDGANG
SRRSPSMRRSQSRDLSDRENSERDRGRDRDRDRDRDRDRDRERTRDRERDRDRDRDRYRD
QERERDRGRDRDRDRRYDNERDRERDRDRRHDYDRDRGRDRDRRYDYDRRSIERSRRDYD
RSRRRSRSRSHSRSLHDQGTRLDQQRTPPRDESKEKKAASSNLAKLKDLYGDFGNKKENI
GDDRAPNRDTSTEEVIRLGGSTWR
NT seq
1335 nt
NT seq
+upstream
nt +downstream
nt
atggctgagcttaagacttctgggagacctatagaccagttgttggagaaggttctctgc
atgaacattctatcttctgattacttcagagaccttttgcgcctgaaaacttatcatgaa
gtgattgatgaaatctataatcaagttgaccatgtggaaccatggatgactggcaactgt
cgtggtccttcaacagccttctgccttctctacaagttcttcacaatgaaacttactgtc
aagcaaatgcatggcctgttaaagcatccagattctccttacattagagctattgggttc
ctttatctgagatatcttggtgattttaagacattatggggttggtatgagccttacctc
aaagatgatgaggaattctctcctggatccagtgggcaaatgaccacaatgggtgtatat
gtgcgtgacttatttctcgggcagtattattttgacacactactaccccgcattcctgtt
cctgtcgtgcggacagcagttgccagtctcgaaaaaatgaatctgccgaccaaactttct
gggtcgattggggattctagtcgtggatctgaggaaacttctcgccggccaccttctgtc
aaagcttccctttcagtgtcctttggtcagcgggcacctcatcgtgcatcaactagagat
tcatctcccatccgaagaacaattgcaccaccatcctatgataaggatggtgcaaatggt
tcaagacgttcccccagcatgcgccggagtcaaagccgtgatttatctgaccgggaaaat
tctgaaagggacaggggccgggaccgggacagggacagggacagggacagggacagggac
agggaaagaactagggacagagaacgtgatagggatagggatagggataggtatagggac
caggaaagagaaagggataggggcagggatcgggatagagatagaaggtatgataacgaa
agagatcgtgaaagggacagagacaggaggcatgattatgacagagaccggggaagggat
agagacaggaggtatgactatgatcgaaggtcaattgagagaagcagaagagactatgac
aggagcaggaggcgtagtaggagtagaagccacagccgaagcttgcatgatcaaggtaca
aggcttgaccagcagcgaactccacctagggatgagagcaaggagaagaaggctgcatct
agcaatctggccaagcttaaagatctatatggcgacttcggcaataaaaaggagaacata
ggtgatgacagggctccaaatagggatactagtactgaggaggttatcagacttggtggt
tctacatggaggtag
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