Solanum lycopersicum (tomato): 101266504
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Entry
101266504 CDS
T02665
Name
(RefSeq) spliceosome-associated protein 130 A
KO
K12830
splicing factor 3B subunit 3
Organism
sly
Solanum lycopersicum (tomato)
Pathway
sly03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sly00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101266504
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sly03021
]
101266504
03041 Spliceosome [BR:
sly03041
]
101266504
03036 Chromosome and associated proteins [BR:
sly03036
]
101266504
Transcription machinery [BR:
sly03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
101266504
Spliceosome [BR:
sly03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
101266504
Complex B
101266504
Complex C
U2 SnRNP specific factors
101266504
Chromosome and associated proteins [BR:
sly03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
101266504
TFTC complex
101266504
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
CPSF_A
Beta-prop_BBS7
WDR55
GIT_SHD
Motif
Other DBs
NCBI-GeneID:
101266504
NCBI-ProteinID:
XP_004236765
LinkDB
All DBs
Position
4:complement(4155790..4162446)
Genome browser
AA seq
1211 aa
AA seq
DB search
MYLYSLTLQQPTGIICAINGSFSGGKVQEIVVARGKVLDLLRPDDNGKLQTLLSVEIFGA
IRSLAQFRLTGAQKDYIVVGSDSGRIVILDYNKEKNCFDKVHQETFGKSGCRRIVPGQYL
AIDPKGRAVMIGACEKQKLVYVLNRDTAARLTISSPLEAHKSHTITFSICGVDCGFDNPI
FAAIELDYSEADQDPTGQAANEAQKHLTFYELDLGLNHVSRKWSEQVDNGANLLVTVPGG
GDGPSGVLVCAENFVIYKNQGHPDVRAVIPRRVDLPAERGVLIVSAAMHKQKTMFFFLLQ
TEYGDIFKVTLDHDNDRVNELKIKYFDTIPVTSSLCVLKSGFLFASSEFGNHALYQFQAI
GDDPDVEASSSTLMETEEGFQPVFFQPRKLKNLVRIDQIESLMPIMDMKIVNLFEEETPQ
IFSLCGRGPRSSLRILRPGLAVSEMAVSQLPGVPSAVWTVKKNVNDEFDAYIVVSFANAT
LVLSIGETVEEVSDSGFLDTTPSLSVSLIGDDSLMQVHPSGIRHIREDGRINEWRTPGKR
TIVKVGSNRLQVVIALSGGELIYFEVDMTGQLMEVEKHEMSGDVACLDIAPVPEGRQRSR
FLAVGSYDNTIRILSLDPDDCMQVLSLQSVSSPPESLLFLEVQASVGGEDGADHPASLFL
NAGLQNGVLFRTVVDMNGGQLSDARSRFLGLRAPKLFSIVVRGRRAMLCLSSRPWLGYIH
QGHFLLTPLSYESLEFAASFSSDQCAEGVVAVAGDALRVFTIERLGETFNETAIPLRYTP
RRFVLQPKKKMVIMIESDQGAYTAEEREAAKKECFEAAGNSENGNAEQMENGEDEDDSDP
LSDEQYGYPKSESGRWVSCIRVLDPRTMQTTCLLELQDNEAAFSICTVNFHDKEHGALLA
VGTAKGLQFWPKKSFEAAYIHIYKFKEDGKVLELLHKTQVDGVPLALCQFQGRLLAGIGS
VLRLYDLGKKRLLRKCENKLFPNSITAIHTYRDRIYVGDMQESFHYCKYRRDENQLYIFA
DDTVPRWLTAAQHVDFDTVAGADKFGNIYFARLSQDVSDEIEEDPTGGKIKWEQGKLNGA
PNKLEEIVQFHVGDVVSCLQKASLIPGGGECIIYGTVMGSVGAMLPFTSRDDVDFFSHLE
MHLRQEFPPLCGRDHMAYRSAYFPVKDVIDGDLCEQFPTLPMDMQRKIADELDRTPGEIL
KKLEEIRNKII
NT seq
3636 nt
NT seq
+upstream
nt +downstream
nt
atgtatctctacagtctcactctgcagcaacccaccggaataatctgtgctatcaacggc
agcttttccggcggaaaagtacaagaaatcgtcgtcgctcgtggaaaagttcttgacctc
cttcgtcctgatgataatggtaagcttcaaactctattatctgttgaaattttcggggct
atacgttccttagcacaatttcggttaacgggtgctcagaaggattacattgtcgttggg
tcggattcaggtagaatagtgatattggattataataaagagaagaactgttttgataaa
gtacatcaggagacttttggtaaatcgggttgtaggaggatagttccgggtcagtattta
gctattgacccaaaaggtagggctgtgatgattggtgcttgtgagaagcagaagcttgtg
tatgttttgaatagggatactgcagctaggttaacgatttcgtcgcctttagaagctcat
aagagccatacgattacattttcgatatgtggggttgactgtggatttgataacccgata
tttgctgctattgaattggattattcggaggcagatcaggatccgacaggccaagctgca
aatgaggctcaaaagcatttgacattttatgaattggatttaggacttaaccatgtttcg
aggaagtggtctgaacaagtcgataatggtgctaatttacttgtgactgttcctggaggt
ggggatggtcctagtggtgtgcttgtttgtgcggagaattttgtgatatataagaatcag
ggacaccctgatgttagggctgttattcccaggagggtagatttgccagcagaacgtgga
gttttgattgtttcggctgctatgcataagcagaagacaatgtttttctttcttttgcaa
actgaatatggagatatctttaaagtgacattggaccacgacaatgacagggttaacgag
ttaaagatcaagtattttgatacgattccagtcacttcttctctgtgtgtgttgaaatca
gggttcctctttgcttcgtcggagtttgggaatcatgcattgtatcagtttcaggctata
ggagatgatccagatgttgaagcttcatcatcaacgttaatggaaactgaagaaggcttt
cagcctgtatttttccagccaagaaagctaaagaatcttgttaggattgatcagattgag
agcttgatgccaatcatggacatgaagatcgtaaatctttttgaggaagaaactccacaa
atattttcactttgtgggaggggtcctcggtcttcattgcgcatacttcggcctggttta
gctgttagtgaaatggctgtctcccagcttcctggtgttccaagtgctgtctggactgtg
aaaaagaatgttaatgatgagtttgatgcctacattgttgtctcttttgcgaatgcaact
cttgtgctttctattggtgagacagttgaagaagttagcgacagtgggtttcttgatact
actccatctctttctgtttcattgattggtgatgattcgcttatgcaagttcatcccagt
ggaataaggcatattagagaagatggccgtattaatgaatggagaactcctggaaagaga
actattgtcaaggttggatctaatagacttcaagtagttattgcactaagtggaggggag
cttatatattttgaagttgatatgactggccagttgatggaagttgagaagcatgagatg
tcaggtgatgtagcttgtctggacattgcccctgttcctgagggaagacaaaggtcccgt
ttccttgcagttggatcatatgataacactatccgtatcttgtctttggaccctgatgac
tgtatgcaggttctgagcctgcaaagtgtatcttcaccgccagagtctctcctttttctt
gaagttcaggcctctgttggtggagaggatggtgcagatcaccctgccagcctttttctt
aatgctggtttacaaaatggtgttttattcaggactgtggtggatatgaatggtgggcag
ctttcagatgcacgctcacgtttcttggggcttagagcccctaagctcttctccattgtt
gtgagaggacggcgtgctatgctctgcctatcaagtagaccatggttaggttacatacac
caagggcattttcttttgacacctttatcatatgagagtcttgaattcgcagcctcgttt
tcatctgatcaatgtgcagaaggtgtggtagcggttgcaggggatgcgttgagagtcttc
acgatagagagattgggtgagactttcaatgaaacagctatacccttaaggtatacacca
agaaggtttgttcttcaacccaaaaaaaagatggtgataatgattgagagtgaccaggga
gcatatactgcagaagaacgtgaagctgccaaaaaagagtgctttgaggcagctgggaat
agtgaaaatggaaatgcagaacaaatggagaatggtgaagatgaggatgatagtgatcca
ctatctgatgagcaatatggttatcctaagtcggagtcaggaagatgggtttcctgcatc
agagtccttgatccaaggacaatgcaaaccacttgtctgctagagcttcaggataatgag
gctgcatttagcatatgcactgttaatttccatgacaaggagcatggagctctgttggct
gttggtactgccaagggcctccagttttggcccaaaaaatcgtttgaagcagcatacatt
catatatacaaatttaaagaggatgggaaggtcctagagcttttgcataagacacaggta
gatggtgtgcctcttgcactatgtcagttccaaggtagactgctggctggtattgggtct
gtccttaggttgtatgatttggggaagaaacggctgctccgaaaatgtgagaacaagtta
ttccccaactcgatcacagctatccacacctatcgtgatcggatttatgttggtgacatg
caagagtcattccactactgtaagtataggcgtgatgaaaatcaactgtacatatttgct
gatgacacggtcccaagatggctaactgcagcacagcatgtagattttgacactgtggca
ggagctgataagtttgggaatatctactttgcgcgattatctcaggacgtttcagatgag
attgaagaagatcccactggtggaaaaataaaatgggagcaggggaagctgaatggagcc
ccaaataagctcgaggaaatagtacaatttcatgttggtgatgtggtctcttgcttgcaa
aaggcgtcacttattccaggagggggtgaatgtataatctacgggactgtaatggggagt
gttggggcaatgcttccatttacctcgagggatgatgttgacttcttctcacatttggag
atgcatttgaggcaggagttcccaccgttatgtggcagggatcacatggcctacagatct
gcctacttccctgttaaggatgtaatagatggagacttatgtgaacaattcccaaccttg
cccatggatatgcagcgcaaaattgcagatgaattggataggacaccaggcgagattctg
aaaaagcttgaagaaataagaaacaaaattatttga
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