Solanum lycopersicum (tomato): 101267369
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Entry
101267369 CDS
T02665
Name
(RefSeq) probable ubiquitin conjugation factor E4
KO
K10597
ubiquitin conjugation factor E4 B [EC:
2.3.2.27
]
Organism
sly
Solanum lycopersicum (tomato)
Pathway
sly04120
Ubiquitin mediated proteolysis
sly04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
sly00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
101267369
04120 Ubiquitin mediated proteolysis
101267369
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
sly04121
]
101267369
Enzymes [BR:
sly01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
101267369
Ubiquitin system [BR:
sly04121
]
Ubiquitin ligases (E3)
U-box type E3
101267369
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ufd2P_core
U-box
DUF2730
Motif
Other DBs
NCBI-GeneID:
101267369
NCBI-ProteinID:
XP_004232186
LinkDB
All DBs
Position
2:complement(66922022..66932224)
Genome browser
AA seq
1040 aa
AA seq
DB search
MATSKPQRTPAEIEDIILRKILLVSLVDSMENDTRVVYLEMTAAEILSEGKGLRLSRDLM
ERVLIDRLSGNFVSAEPPFQYLVNCYRRAHEEGKKIASMKDKNVRSEMELVVKQVKRLAV
SYCRIHLGNPDMFPNWDTAPANVSPLLPLLFSEVSSSVDVFGGSSGSGGVSSPPGFLDEL
LKDADFDSMDPILKQLYEDLRGTVLKVSALGNFQQPLRALLFLVKYPVGAKCLVNHPWWI
PNSVYMNGRVIEMTSILGPFFHVSALPDHAIFKSQPDVGQQCFSESATRRPADLLSSFTT
IKTVMNNLYDGLAEVLMSLLKNSTIRENVLGYLAAVINKNSSRAQLQVDPLSCASSGMFV
NLSAVMLRLCEPFLDANLTKRDKIDPQYVFSSTRLELRGLTAMHASSEEVSDWINQNNPG
KVDVAKEGSDGENRLLASQEATSSGNDSGGPSILQYNNPISSSSEKAKYPFICECFFMTA
RVLNLGLLKAFSDFKHLVQDISRSEDNLSTMKTMLEQTPSPQLQQEISRLEKDLESYSQE
KLCYEAQILRDGGLLQRALSFYRLMVVWLVGLVGGFKMPLPCPCPMEFASMPEHFVEDAM
ELLIFASRIPRALDGVLLDDFMNFIIMFMASPEYIRNPYLRAKMVEVLNCWMPRRSGSTA
TSTLFEGHRLSLEYLVKNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELLEYLWQVPSHRN
AWRQIAKEEEKGVYLNFLNFLINDSIYLLDESLNKILELKELEAEMSNTAEWEQRPAQER
QERTRLFHSQENIIRIDMKLANEDVSLLAFTSEQITVPFLLPEMVERVASMLNYFLLQLV
GPQRKSLSLKDPEKYEFRPKELLKQIVKIYVHLARGDKEKIFPAAIIRDGRSYSDQIFSA
AADVLRRIGEDMRIIQEFIDLGAKAKIAASEAMDAEAALGDIPDEFLDPIQYTLMKDPVI
LPSSRITVDRPVIQRHLLSDSTDPFNRSHLTADMLIPDTELKAKIEEFIRSHELKKPGED
LNLQHTKTTIQTTDTSNLIE
NT seq
3123 nt
NT seq
+upstream
nt +downstream
nt
atggcgacttctaaaccacagaggacgccggcggagatcgaggatataattcttcggaaa
attttacttgtatctctagttgattcaatggaaaatgatacacgcgttgtgtatttagag
atgacggcggccgagattttgagcgagggcaaaggattaaggttgtctagggatttgatg
gagagggttttaatcgatcggctttctggtaattttgtgtccgcggaaccaccttttcag
tatttggtcaactgttaccgtcgggctcatgaagaagggaaaaaaattgcgtcgatgaag
gataagaatgttaggtctgagatggaattggtggttaagcaagtaaagagacttgctgta
tcatactgtaggatacatttaggaaatcctgatatgtttcccaattgggatacggcacca
gcaaatgtatctccgttgcttcctttgttgttttctgaggtttcaagttctgtagatgtg
tttggtgggagtagtggtagtggaggagtgtcgagtccacctgggtttttggatgagtta
ttaaaggatgcggattttgatagtatggacccaatactgaagcagttgtatgaggatttg
agagggaccgtgctaaaggtttcagctttgggtaattttcagcagcctcttagagcttta
ttatttttggttaagtatccagtaggtgccaagtgtctggtgaatcatccttggtggatt
ccaaatagtgtttatatgaatggaagagttatcgagatgacaagcattttgggtcctttc
tttcatgtcagtgctttacctgatcatgcaatcttcaagagtcagccggatgttggccag
cagtgtttctcggaatcggctacacgtcgtcctgctgatctcttgtcttctttcacaaca
atcaaaactgttatgaataacttgtatgatggcttggcagaagtccttatgtctcttctg
aaaaattcaaccattcgtgaaaatgtccttggatatcttgcagcagttataaacaaaaat
tcctcaagggcacagttgcaggttgatccattatcttgtgctagttcaggaatgtttgtc
aatctcagtgccgttatgcttcggctctgtgaacctttcttagatgccaatttgacaaaa
cgggacaagattgatccccaatatgtgttctctagcacccgtctggaactgagggggttg
actgctatgcatgcatcatcagaagaagtctctgattggataaatcaaaataatcctggg
aaagttgacgtcgctaaagaaggcagcgatggagaaaatcggttgttggcatctcaggaa
gccacaagctctgggaatgattctggtggaccttcaattctccaatataacaacccaata
tcaagtagtagtgagaaagctaaataccccttcatatgtgaatgcttcttcatgactgca
cgggtgctcaacctgggcctcctaaaagcattttcagattttaagcatcttgttcaggac
atttcaagatccgaagataatttgtctaccatgaaaaccatgctagaacaaacaccctcg
ccacagttgcagcaggaaatatctcgcttggaaaaagatcttgaatcgtattcacaggag
aaattatgctatgaagcccaaatattgagggatggagggcttctacagcgtgcattatcc
ttctacaggttgatggttgtttggttggtcgggcttgttggtggttttaagatgccttta
ccttgcccttgccctatggagtttgcatctatgcctgagcacttcgttgaagatgccatg
gagctgctaatttttgcttctcgaattcccagagctttggatggtgtcttgctggatgac
ttcatgaatttcattatcatgttcatggcaagtccagaatatatcagaaacccttacctt
agagcgaagatggttgaagtcctgaactgttggatgccccgcagaagcggctctactgca
acgtctactttgtttgaggggcatcgactctctctggagtaccttgtgaaaaatcttttg
aagctttatgttgacattgaatttacaggttctcacacacagttctatgataaatttaat
atccgccacaacattgctgaactacttgaatatctttggcaagttccaagtcaccggaat
gcatggagacagattgccaaggaggaggagaagggtgtttatttgaatttcttgaacttc
ttaattaatgatagcatttatcttctcgatgaaagtcttaataaaattcttgaactaaaa
gagctggaagctgaaatgtctaacacagcggaatgggagcaaagaccagctcaagaaagg
caggagagaacccgtctgttccattcacaagagaatataattcgaattgatatgaagctg
gcaaatgaagatgtgagcctgttagcatttacttcagaacaaattactgtcccttttctt
cttcctgagatggtggaaagagttgctagcatgttaaattacttcttactacagctggtg
ggcccacaaagaaaatctcttagcttgaaagatcctgaaaagtatgaattccgcccgaaa
gagttgctgaaacagattgtgaaaatatatgtgcatttagcgagaggagataaggagaaa
atctttccagctgcaattataagagatggccgatcgtacagtgatcagatatttagtgct
gcagctgatgtccttagaagaatcggtgaagatatgaggatcatacaagagttcatcgac
cttggtgcaaaggccaagattgcagcttcagaagcaatggatgctgaggctgctcttgga
gacattcccgatgaattccttgatccaatccaatatactttaatgaaggatcctgtcatt
cttccttcttcgaggataacagttgaccggcctgtcattcaacggcaccttcttagtgat
agtacggatccatttaaccggtctcatctgactgcggacatgttgattcccgacaccgag
ttgaaggctaaaattgaagagttcatccggtcccatgaactgaagaagcccggggaggat
ttgaatttgcaacacacaaaaacaaccatacaaacaactgatacttcaaatttgattgag
tag
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integrated database retrieval system
