Solanum lycopersicum (tomato): 101267927
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Entry
101267927 CDS
T02665
Name
(RefSeq) HYL1-interacting GIY-YIG-like endonuclease-like protein
KO
K15078
structure-specific endonuclease subunit SLX1 [EC:3.6.1.-]
Organism
sly
Solanum lycopersicum (tomato)
Pathway
sly03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
sly00001
]
09120 Genetic Information Processing
09124 Replication and repair
03460 Fanconi anemia pathway
101267927
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sly03400
]
101267927
DNA repair and recombination proteins [BR:
sly03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
101267927
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GIY-YIG
Motif
Other DBs
NCBI-GeneID:
101267927
NCBI-ProteinID:
NP_001343192
LinkDB
All DBs
Position
9:26771947..26773686
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AA seq
350 aa
AA seq
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MGKRKEQKKVCHRDDEDKEVEGSRFFACYLLTSMCPRFKGHTYIGFTVNPRRRIRQHNGE
VRMGALRTKRKRPWEMILCIYGFPTNVSALQFEWAWQHPVESRAVRQAAASFKTLGGVAN
KIKLAYTMLTLPEWQSLNLTVNFFSTKYKMHSAGCPSLPEHMRVHICALDELPCYTGIDR
DEWENICALDELPSYTGIDRDEWENREECESSEELTDEISTNSNSSFSNQDKDDEQTDWR
ELDERAGENSTRGREHSYIIIDSPAERLCSIQGDFFHIADKKERHQLDDEFGENQANKMY
DSLATKNAGLPCDIEVIDVFTPPVRADNKRRRLSASVPEIIDLTDSPVYV
NT seq
1053 nt
NT seq
+upstream
nt +downstream
nt
atggggaaacggaaggagcagaagaaagtttgtcatcgtgatgatgaggataaagaagta
gaaggaagcaggttctttgcctgttacttgcttacatctatgtgccccagattcaaaggc
cacacttacatcggatttacagtaaatcctcgccgtagaattcgacagcacaatggagag
gtaaggatgggtgcattgaggactaagaggaagcgtccctgggagatgattttatgcata
tatggcttccctaccaatgtatcagccctccagtttgaatgggcctggcagcatccagta
gaatcccgtgcagttagacaggctgcagcatcattcaaaactcttggaggagttgctaat
aagataaaattggcatatacaatgcttactctccctgagtggcaaagcctgaacctcacg
gtaaatttcttctccacaaaatataagatgcattcagctggttgtcccagtcttccagag
cacatgagagtccatatttgtgcactggatgaacttccctgttatacaggaattgacagg
gatgagtgggaaaatatttgtgcactggatgaacttcccagttatacaggaattgacagg
gatgagtgggaaaatagggaagaatgtgagagcagtgaagaattaacagatgaaatatcc
acaaattctaacagttcttttagtaatcaagacaaagacgatgaacaaactgattggaga
gagcttgatgaacgtgctggagaaaatagcactcgtggtagagagcattcatatattatc
atcgactctccagcagaaaggttatgttcaattcaaggtgatttctttcacatagcagac
aagaaagagagacatcagttggatgatgaatttggtgagaaccaggccaacaagatgtat
gattcattagcaaccaagaatgctggtttgccttgtgacattgaggttattgatgttttt
actcctccagtgcgtgcagacaacaaaagaagaagactttcggctagtgtgcctgaaata
atagacttgacagactcacctgtttatgtctaa
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