Solanum lycopersicum (tomato): 101268011
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Entry
101268011 CDS
T02665
Name
(RefSeq) enhancer of mRNA-decapping protein 4-like
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
sly
Solanum lycopersicum (tomato)
Pathway
sly03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sly00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
101268011
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sly03019
]
101268011
Messenger RNA biogenesis [BR:
sly03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
101268011
mRNA degradation factors
5'-3' decay
Decapping complex
101268011
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40
WD40_WDHD1_1st
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
WDR55
Beta-prop_TEP1_C
Beta-prop_EML_2
Beta-prop_Vps41
Beta-prop_DCAF4
DUF6124
Motif
Other DBs
NCBI-GeneID:
101268011
NCBI-ProteinID:
XP_004244016
UniProt:
A0A3Q7HG37
LinkDB
All DBs
Position
7:69988491..69998318
Genome browser
AA seq
1407 aa
AA seq
DB search
MASSPGNPNQPGGTGSGPFDIHKFFKPSTPTNPNPQNPIISSHYPSPNASYPPPTPGAGA
GVGGVYPYQTQTTTPFRHHPQFTHNLPQYSTPHDTQLMHQQRSMSFPTPPLQPPPPTSSP
HQFPNPNPGATLMALLSPQPSTSEVQIQSTMPMPPIQPTSSGSELSDFSSGPNVGVAHSG
PGPMRMPSSKLPKGRHLNGDHIVYDIDVRFPSEVQPQLEVTPITKYGSDPGLVLGRQIAV
NKTYICYGLKLGAIRVLNINTALRSLLKGLAQRVTDMAFFAEDVHLLASASVDGRVYIWK
ITEGPDEEEKPQITGRIVIAIHIVGEGESVHPRVCWHCHKQEILVVGIGKRILKIDTIKV
GKGAVFSADEPLRCPVDKLVDGVQLIGTHDGEVTDLSMCQWMTTRLVSASVDGTIKIWDD
RNPLPIAVLRPHDGHPVSSATFLASPHHPDHVVLITGGPLNREIRIWALAGGEGILLQSD
DESWRCTQTLELKSSAEANVEEAFFNQVVALSQAGLLLLANAKKNAIYAVHLEYGPNPKA
TRMDYIAGFTVTMPILSFTGTSGLLPHGEQIVQVYCVQTQAIQQYALDLSQCLPPPTESV
VFERTESGVSRDSANIEGFAPVDPPGSKQQEFPLSSSAPKSAVHDIGSEISQTARYPTSA
APTESTTSQEFASSIPETKSSILPSVTSDNDIASSASPPPLSPKLSRNLSGFRGPSNSFG
ADTFDNDQVGNQKVVDYPVDPQKDGTPPILSDIASLDDEHKTSGDDVPSGISHLVKFKHP
THLVTPSEILMARSSSEVSIVNEQKSESEMNVLDAVTNNDTRTVEMEVKVGGEAKFSQKT
DMGSQDLHSFVSENKEKVFCSQVSDLGLEMARECRTLSPETYTVEESRQFDGVSGSEGPS
QPSVTPEEDHDSAKDISEKDLDSTMSVTVHQPPAPSVKGKKQKGKNSQVSGPSSASPSAF
NSTDSPNEAVVSSSTPSMESAFSQILSMREMLNQVLTMQKETQKQMEVMVAVPVTKEGRR
LEAALGRSMEKSVKANSDALWARLQEESAKQEKSLRDRTQQITNLISNCLNKDMPGLMEK
LMKKELAAVGQAVARSITPAIEKTISSAILEAFQKGVGDKAVNQLEKAVNSKLEATVARQ
IQAQFQTSGKQALQETLKSTLEVSVIPAFEMSCKAMFEQVNSTFQKGIADHTVAAQQQFE
SVHSPLAIALRDAINSASAMTQTLSGELADSQRQLLALAVSGANSQSANPLNHMNNGSLL
HEKIETPPDPTKEISRQLGEHKYEEAFTAALQMSDVSIVSWLCSQVDLAGILSLNPLPLS
QGVLLSLLQQLSCGISSETVQKLSWMRDVLSAINPNDPLIVVHVRPIFEQVYQMLVQRRN
AATTPPAELSIIRLLVHVINSMMMAVK
NT seq
4224 nt
NT seq
+upstream
nt +downstream
nt
atggcttcttctcctggtaatccgaaccagccaggtggtactggttcaggaccatttgat
atacacaaattcttcaaaccctcaaccccaacaaaccctaatccccaaaaccctataatt
tcatcccattatccatctccaaacgcttcatacccaccacccacccccggagccggtgct
ggagtcggtggggtttacccttaccaaactcagactacaaccccttttcgtcatcaccct
caattcactcacaacttgccgcaatacagtacaccacatgatacccagttaatgcatcag
cagagatccatgtctttccccactccaccgcttcaaccaccaccacctactagtagtcct
catcaattccctaaccctaatcctggtgctacgcttatggcactgttgagtcctcaaccg
tctacttcggaagttcagatacagtccactatgcctatgcctcctatacaacctacctct
tcggggtctgagctttcagatttttcctctggaccgaatgttggtgttgctcattcaggt
ccgggaccaatgagaatgccgagcagtaaattacctaaagggagacatttgaatggtgat
catattgtttatgatatagatgttaggtttcctagtgaggtgcagccacagctggaggtt
actcctattactaagtatggttcggatcctggtcttgtattaggccggcaaattgcagtt
aacaaaacctatatatgttacggattgaaattgggggctattcgggttcttaacattaat
actgcattgagatcattgcttaaaggtcttgcacagagggtcacggacatggctttcttt
gcagaggatgttcatctcttggctagtgcgagtgttgatggccgggtttatatatggaaa
attactgaaggaccagatgaagaagagaaaccacaaattacaggaaggattgtcattgct
attcatattgttggtgaaggggaatctgttcacccacgtgtttgttggcattgtcataaa
caagaaattcttgtggttggaatcgggaaacgcattttgaaaattgataccattaaagtg
ggaaaaggtgcagtattttcagctgatgaacctctcaggtgtcctgttgacaagttggtt
gatggggtacaacttattggtacccatgatggagaagtgactgatttatctatgtgccag
tggatgaccactcgtttggtatctgcatcagtggatggcacgataaagatatgggatgac
cgtaatccacttccaatcgcagttctcaggcctcatgatggtcatcctgttagttctgct
accttcttggcttccccacaccacccagatcacgtcgtactcatcactgggggtcctctt
aatcgggaaataaggatatgggcattagcgggtggagaaggcattttgcttcagagtgat
gatgagtcatggcgctgtacacagacattggagctgaagagttcagctgaggctaatgtc
gaagaggcattttttaaccaagttgtagccttgtctcaagcaggtctgctcctactagct
aatgcaaaaaagaatgctatatatgctgtgcatctagagtatggcccgaatccgaaggct
acccggatggattacatagcaggatttacagtcaccatgccaattttgagcttcactggg
acgagtggcctattgccccatggtgaacagattgtgcaggtgtattgtgtacagacacag
gccattcagcagtatgccttggacctgtcccaatgcttaccacctccaacagagagtgtg
gttttcgaaaggacagaatctggcgtttcgcgcgattctgcaaacattgaaggatttgct
cctgttgaccccccaggaagtaaacagcaggagtttcctttatctagttcagctcctaaa
tcagcagtacatgacattggctctgagatttcacaaacagctagatatcctacaagtgct
gcacctactgaatcgaccacctctcaagaatttgcttcctccattccagaaactaaatcg
tctattttgcccagtgtaactagtgataatgatattgcctccagtgcatcgcctcctcct
ttgagtcctaaattgtctcgaaacttatctggttttagaggtccgtcgaacagctttggg
gcagacacctttgataatgaccaagttggaaatcaaaaagttgttgattatccagtagat
ccacaaaaggatggcacgcccccaatcttgtcagatattgcttccttggatgatgaacat
aaaacatcaggggatgatgttccctctggtatcagtcatcttgtaaagttcaagcaccca
actcatttggtgactccttcagagatattgatggctagatcatcctctgaggttagcatt
gttaatgagcagaaaagtgagtcagaaatgaatgttctggatgctgtaactaacaatgac
acccgcactgtagagatggaggttaaagttggtggtgaagcaaaatttagtcaaaaaact
gatatgggctctcaagaccttcattcttttgtgtctgaaaataaagagaaggttttttgc
tctcaagtatctgatcttggattagaaatggctagagaatgtcgcaccttatctcccgag
acctatactgtagaggaatctaggcagtttgatggggttagtggaagtgagggaccatct
caaccttcagttacaccagaggaagatcatgactctgcaaaggacatctctgaaaaagat
ttagactcaactatgtcagtcactgttcatcaaccaccagctcccagtgtaaaagggaaa
aagcaaaaggggaagaattctcaagtgtctggcccatcttcagcatcgcctagtgctttt
aattcaacagattctccaaatgaggctgttgtcagctcaagtaccccttctatggaaagt
gctttctcacaaattttgtccatgcgtgagatgcttaatcaggttctgactatgcaaaaa
gaaacacaaaagcagatggaagtgatggtcgctgttccagtgaccaaagaaggaagaaga
cttgaagctgccttgggaaggagcatggaaaaatctgtcaaggccaattctgatgcttta
tgggctcgtttacaagaagagagtgcaaaacaggagaagtctctccgtgatcgtacacaa
caaataaccaatttgatctctaactgcttaaataaggacatgccaggtctgatggaaaaa
ttaatgaagaaagagctagcagctgttggacaagctgtagcacgcagcattacccctgct
atagagaaaacaatatcatctgcaattttagaggccttccagaaaggagttggtgacaag
gcagtgaaccaactagagaaagcagtaaactccaaacttgaagctactgtagctagacaa
atccaagcacagttccaaacctctggcaagcaagctcttcaggaaacactgaaatctact
ctggaagtctcagtgatccctgccttcgagatgtcatgcaaggcaatgtttgagcaagta
aattcaacatttcagaaaggcattgctgaccacacagttgctgcacaacagcaatttgag
tccgtgcattcacctttggcaatcgctctgagagatgccatcaattcagcatcggcaatg
acacagacactgagcggagagcttgctgatagtcagagacagttgcttgctcttgcagtt
tctggagcaaattcccaatcagcaaatccactcaaccacatgaataatggatcattgcta
catgaaaagattgagacacctccagatccaaccaaagagatatctagacagttaggggag
cacaagtatgaggaagcattcactgcagcattacaaatgagtgatgtgtcaattgtgtca
tggttatgctctcaggttgatttggctgggattttatcgttgaatcccctccctctgagc
caaggagtgctcctttcccttcttcagcagttatcgtgtggtattagctcagagacggtc
caaaaactctcttggatgagggatgtgctctctgccatcaatccaaatgacccactgatt
gtagtgcatgttcggcccatctttgagcaagtatatcagatgttagtacaacgcagaaac
gctgctaccactcctcctgctgaactttcaatcattcggcttcttgtgcatgttatcaat
tcgatgatgatggctgttaaatga
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