Solanum lycopersicum (tomato): 101268414
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Entry
101268414 CDS
T02665
Name
(RefSeq) uncharacterized protein isoform X1
KO
K12589
exosome complex component RRP42
Organism
sly
Solanum lycopersicum (tomato)
Pathway
sly03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sly00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
101268414
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sly03019
]
101268414
Messenger RNA biogenesis [BR:
sly03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
101268414
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
101268414
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
101268414
NCBI-ProteinID:
XP_004244581
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Position
8:complement(2846508..2849186)
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AA seq
314 aa
AA seq
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MLEADLECFFFDEAVLYLSFHTWDKKMVGLSVGERNFIKGGIAQDLRNDGRKRLTYRPIY
VETGVIPQANGSAKVKLGATDVIASVKAELGKPSLSHPDQGKVFIYVECSPTAEPSFEGR
GGEELSTELSTALERSLLGGKSGAGAGIDPASLLIKEGKVCWDLYVDCLVISSDGNLLDA
LGAAIKAALSNTGIPRVQFREAASTDEHADVDVSDEEFLQFDTSGVPVIVTLTKVGRHYI
VDATSEEESLMSSAVSISVNRRGLICGLTKRGGAGLDPSVILDMISVAKHVSEQLINKLD
SEIEAAERANEEEP
NT seq
945 nt
NT seq
+upstream
nt +downstream
nt
atgttggaagctgacctcgaatgcttctttttcgatgaagcagtattgtatttgagtttc
cacacttgggataaaaagatggtagggttatctgttggagaaaggaactttattaagggt
ggtattgcccaggatctgcgtaatgatggtagaaaacggctaacttatcggccaatttat
gtggaaacaggtgttattcctcaggcaaatggatctgcgaaagtcaagttgggtgcaact
gatgttattgccagtgtcaaggcggaacttggaaaaccaagtttgtctcatcctgatcaa
ggaaaggtttttatttacgtagagtgcagtcctacagcagagccatcatttgagggcaga
gggggtgaggaattgtccacagagctctcgactgcacttgagcggagtctcttgggcggt
aaaagtggagcaggggctggaattgatccggcgtctctcttgatcaaagagggaaaagta
tgctgggatctgtatgtcgactgccttgtcattagctcggacggaaatctgctggatgct
ctaggtgctgcaatcaaggcagctctgagcaatacaggtattccgagagttcagtttcga
gaagctgcttcaacagacgagcacgcagatgtggatgttagtgatgaagaatttttgcaa
ttcgacaccagtggagtacctgtcatagttactttgacaaaggttggaaggcactacatt
gtcgatgcaacttcagaggaggaatccctaatgagctcagctgtttctatttctgttaat
agacgcggactaatatgtggattgactaaacgaggaggtgcagggttggaccctagcgtc
atacttgacatgatatctgttgcgaaacatgtaagtgagcagctaataaacaaacttgat
tcggagatagaagcagccgaaagagcaaatgaagaggaaccatga
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