KEGG T02665: 101268737

Solanum lycopersicum (tomato): 101268737

Entry

101268737         CDS       T02665

Name

(RefSeq) probable CCR4-associated factor 1 homolog 11

K12581

CCR4-NOT transcription complex subunit 7/8

Organism

sly Solanum lycopersicum (tomato)

Pathway

sly03018

RNA degradation

Brite

KEGG Orthology (KO) [BR:sly00001]
09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    101268737
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sly03019]
    101268737
Messenger RNA biogenesis [BR:sly03019]
Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     101268737
  mRNA degradation factors
   3'-5' decay
    Ccr4-NOT complex
     101268737

SSDB

Motif

Pfam:

CAF1

Other DBs

NCBI-GeneID:

101268737

NCBI-ProteinID:

XP_004251085

UniProt:

A0A3Q7JPF4

LinkDB

Position

11:58826790..58828226

AA seq 285 aa
MAVEIVDSDENPIKIREVWSDNLESEFELIRRVIDHYPFISMDTEFPGVIFKPEVVSSRK
NRRRYVPLLPSEHYKMLKSNVDVLNIIQVGLTLSDSDGNLPDLGTAGVNRYIWQFNFSDF
DVERDRHAPDSIELLRRHGIDFEKNKVNGIDSYRFAELMMSSGLVCNETVSWVTFHSAYD
FAYLLKILTRRELPGELDDFLEIFRVFFGDNVYDVKHLMRFCEKLYGGLDRIAAVLEVNR
AVGKCHQAGSDSLLTWHAFQKMRDVYFVNDGPEKYAGVLFGLEVY

NT seq 858 nt +upstreamnt +downstreamnt
atggctgttgaaattgttgattcggatgaaaacccgattaagatccgggaagtttggtcg
gataatctggaatcggagtttgagcttatacgaagagtaattgatcactacccattcatc
tcaatggatacagagtttccgggagtcatttttaagccggaggttgtttcatcccggaaa
aatcgccggcgatatgtgccgctgttaccatcggagcattacaagatgttaaaatcaaac
gtcgacgttctgaacataattcaagtaggacttacattgtccgactccgacgggaactta
ccggatctgggtaccgccggtgtgaatcgatacatctggcagttcaacttctccgatttc
gacgtggagcgtgatagacacgcgccggactcaatcgagctactccggcgtcacggcatc
gatttcgagaagaacaaggtgaacggaatcgactcttatcgcttcgccgagctgatgatg
tcgtcggggcttgtatgcaacgaaaccgtaagctgggttacgttccacagcgcttacgat
ttcgcatacctcttaaaaatcctcacccgccgggaacttcccggcgagttagatgatttt
ctggagattttcagggtgttcttcggtgacaatgtttatgatgtgaagcatttgatgagg
ttttgtgagaaactttacggcggtttagaccggattgcggcggttttagaggtgaaccgg
gcggtcggaaagtgtcatcaggccggttcagatagtttattgacttggcacgcatttcaa
aaaatgagagacgtgtattttgtaaatgacggaccggagaaatacgccggcgttttgttt
ggattagaagtgtattaa

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