KEGG   Solanum lycopersicum (tomato): 101268826
Entry
101268826         CDS       T02665                                 
Name
(RefSeq) replication factor C subunit 2
  KO
K10755  replication factor C subunit 2/4
Organism
sly  Solanum lycopersicum (tomato)
Pathway
sly03030  DNA replication
sly03410  Base excision repair
sly03420  Nucleotide excision repair
sly03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:sly00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    101268826
   03410 Base excision repair
    101268826
   03420 Nucleotide excision repair
    101268826
   03430 Mismatch repair
    101268826
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:sly03032]
    101268826
   03036 Chromosome and associated proteins [BR:sly03036]
    101268826
   03400 DNA repair and recombination proteins [BR:sly03400]
    101268826
DNA replication proteins [BR:sly03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    101268826
  DNA Replication Termination Factors
   ELG1-RFC complex
    101268826
Chromosome and associated proteins [BR:sly03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    101268826
DNA repair and recombination proteins [BR:sly03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     101268826
  Check point factors
   HRAD17(Rad24)-RFC complex
    101268826
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 RCF1-5-like_lid AAA_22 Rad17 RuvB_N AAA_11 Mg_chelatase AAA_16 AAA_assoc_2 AAA_5 DUF3802 nSTAND3 AAA_14 ResIII DEAD SLFN-g3_helicase AAA_24 AAA_2 PhoH AAA_28 AAA_19 AAA_18 AAA_7 DUF3853 AAA_30 NPHP3_N RNA_helicase DNAX_ATPase_lid AAA_25 Parvo_NS1 TIP49_C DUF815 IstB_IS21 bpMoxR TIP49 ATPase_2 NB-ARC
Other DBs
NCBI-GeneID: 101268826
NCBI-ProteinID: XP_004250308
UniProt: A0A3Q7ISG3
LinkDB
Position
11:6255980..6268324
AA seq 339 aa
MAPVMQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETSNCPHMLFYGPPGTGKTTTAL
AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKNFAAVAVGSNRQSGYPCPPFKIIIL
DEADSMTQDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLPEEIMGS
RILHICKEEGLNLDSEALSTLSSISQGDLRRAITYLQSAARLFGSSISAKELISVSGVIP
NEVVQAIFSACRSGNFDLANKEVNNVIAEGYPVSQMLSQLYDILVDADDISDEQKARICK
KFAEADKCLVDGADEYLQLLNVASSTMQALSNMPQDMTF
NT seq 1020 nt   +upstreamnt  +downstreamnt
atggcgccagttatgcagagctctcagccatgggtcgagaaatatcgaccgaagcaagtg
aaggatgtagctcaccaggatgaagtcgttcgagtcctcaccaacactctcgagacttct
aactgcccgcatatgttgttttatggtcctcctggaactggaaagacaaccactgctctt
gccattgcccatcagcttttcggacctgagctgtataaatcgagggtattggagctaaat
gctagtgatgaccgtggtatcaatgtagttcgtacaaaaattaagaactttgctgctgtt
gctgtaggttctaatcggcaaagtggttatccttgcccaccttttaagatcataatcctt
gatgaagcagattcaatgactcaagatgctcaaaatgccttgcgacgaactatggagaca
tattcaaaagttacaagattcttcttcatttgtaattacatcagcaggatcatagagcca
cttgcttctagatgtgcgaagttcagattcaagccacttcctgaagaaataatgggcagc
cgaatattgcatatttgtaaagaagaaggtcttaatctagattcagaggctctttctacc
ctcagttcaatttctcaaggtgatttgcgaagggctattacatacttacaaagtgctgct
cggttatttggatcttccatatcagcaaaggaactgattagtgtgtctggggtcatccca
aatgaagttgttcaggctatattctcagcttgcagaagtggcaattttgacttggcaaac
aaagaagtgaacaatgtcattgcagaaggatatcctgtttctcagatgctgtctcagttg
tatgatatattagttgatgcagacgacatttctgatgaacaaaaagcaagaatatgcaag
aaatttgctgaagcagacaagtgtcttgttgacggagcggatgagtatttgcaacttttg
aatgttgcaagcagcacaatgcaagcacttagcaacatgccacaggacatgacattttga

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