Solanum lycopersicum (tomato): 109119442
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Entry
109119442 CDS
T02665
Name
(RefSeq) LOW QUALITY PROTEIN: putative tRNA pseudouridine synthase
KO
K06173
tRNA pseudouridine38-40 synthase [EC:
5.4.99.12
]
Organism
sly
Solanum lycopersicum (tomato)
Brite
KEGG Orthology (KO) [BR:
sly00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sly03016
]
109119442
Enzymes [BR:
sly01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.12 tRNA pseudouridine38-40 synthase
109119442
Transfer RNA biogenesis [BR:
sly03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
109119442
Prokaryotic type
109119442
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PseudoU_synth_1
Motif
Other DBs
NCBI-GeneID:
109119442
NCBI-ProteinID:
XP_069149262
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Position
2:complement(16540627..16550862)
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AA seq
309 aa
AA seq
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MSCGVSLSHCKFCNAAFEGELEKDIFKAGGIRDSNFGNLYKIGXGRSSRIYKGVHSLATM
ISIKMEIRADAWEDDPNGVTLANFVNSSLPENIGVFSKLPXKKRFDARRECNAHKYSYLI
PAEMIGIKNDSTSSKIEYHIANLNDILNSFEGEHPFHNYTIRSKYRKQSPARNLLKNDSL
LKKGRPSSEKEISGSEECDGEQIEGNCNEKVSHSKDLNSAIPIQARWLHESDVRDKLNSA
HFRRIFHRHCEKLENLLDINYVEVSICGESFTLHQIREMVGTTIAIKHNLLPHDILRMSL
CKKVYFIYI
NT seq
930 nt
NT seq
+upstream
nt +downstream
nt
atgtcatgtggagtttcactaagccattgcaagttctgtaatgcagcctttgaaggtgaa
ctggaaaaagatatcttcaaagctggtggtattcgagacagtaattttggaaatttatat
aaaattggcntagggagaagtagtcgaatatataaaggagttcattctttggcgacaatg
atatctataaaaatggagattcgtgcagatgcatgggaggatgatccaaatggggtcact
cttgctaatttcgtaaactcgagtcttccagaaaatatcggagttttcagtaaactaccc
taaaaaaagaggtttgatgccagaagagagtgtaatgcacacaagtattcttatctcatt
cctgctgagatgatcgggataaagaatgattcaacttcttctaaaatcgagtaccatata
gccaatcttaatgatatactgaattctttcgagggggaacatcctttccacaattacaca
atacgatccaagtacaggaaacaatctcctgccagaaacttgttaaaaaatgatagtctc
ttaaaaaaagggaggccctctagtgagaaagaaatatctgggtctgaggagtgtgatgga
gaacaaattgaaggcaactgtaatgagaaagttagtcattcaaaggatctcaattctgct
ataccaattcaagcaagatggctccatgaatccgatgtaagagataaacttaactctgct
catttccgaagaatttttcaccgtcattgtgaaaaattggagaatttgctcgacattaat
tatgtagaagtttccatttgtggagagtcattcacgttacatcaaatacgtgaaatggta
gggacaacaattgcgataaaacacaatcttctaccacatgatattttgagaatgtcatta
tgtaagaaagtttacttcatatacatataa
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