Solanum lycopersicum (tomato): 138347183
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Entry
138347183 CDS
T02665
Name
(RefSeq) SNF2 domain-containing protein CLASSY 4-like
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
sly
Solanum lycopersicum (tomato)
Pathway
sly03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sly00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
138347183
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sly03400
]
138347183
DNA repair and recombination proteins [BR:
sly03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
138347183
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
AAA_11
Motif
Other DBs
NCBI-GeneID:
138347183
NCBI-ProteinID:
XP_069150931
LinkDB
All DBs
Position
1:complement(73746462..73775029)
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AA seq
1235 aa
AA seq
DB search
MDSGDGSGPKQRNRSCQNGNLTPSSSTCAVNIGKEGVGSGRKRKMLVSEDATKFSPATCE
PIIGRVFVEEIPNDDEDDTDDFEDDNVVIIVEEEESNMLNEKDEEVVSSTSSMKSVEVHT
DSTSSSESESEDEKNEAGEKESNVGLAPELVVESEKQKKGGSYLLRSRSLSKSKKKKLNN
GTGSSSPILLTAEEESDGEESKSEEDCEVEYSVKNVVQKDVVQKDRRIGKKFLEDSEFMK
FVIDSIINVDDHDKITPFEKKKRVPVKETLPLVFRFEDEEPPPPEKEEWEKEVEDLFAEM
QMCILESDIGFTNSSASQMQKGDLSDCQMGNHKLVLDEQIGLICKVCPYVHLEIKYIFPS
FAQRTRGRYERKHLGQPPSLLDVGGFRFSDSSEVQDSLINEEGTVWDLVPQSAKSTMHPH
QRGGFEFMWKNVAGDINLERLRQPLSDSKGGCIISHPPGTGKTRLTLVFLQSYLKLFPKS
RPVIIAPSSLLLNWEAEFQKWEVDIPFHNLNSKDFSLQEDEATVSVFRCLSHPGKRNPHL
IRMVKLGSWVKGNSVLGISYDLFRILTGDDGDGYVKPIREILLKYPGLLVLEEGHTARNE
QSLVWKALKKVETEKRIVLSGTPFQNNIKELYNTLCVVSPKFAADLEQKWASLSSSIDKN
ARALEELRDIISPLVHKCSENVKKVSLPGIRDTVVHLKPTDLQKELLRRIPENPSSFYEQ
NLVSLISVHPSLVANRKEFSDLESQLKERGCRLDPDTGVKMKFVVELIRLCGGMKERVII
FSQLLDPLNLIKEQLSSLFGWTLGREILYMDGKLDVKQRQISINSLNDRKSDVKVLLASI
KACSEGISLIGASRVVLLDVLWNPSIEEQAISRAYRNGQTKFVHVYCPVTSKWEVDKIEQ
QTRKKYHSDVLLSRNHEAKMDPSCCESEDTILVSMFEHEGLRHIFEKLSHAPRVLPPTTC
IDSCNQPPKPSNKLEHFFGYLLEEFLMPSIITGTLMQIHMKNANKIRIFITHKMLLCFDD
PHKCGDPVPGRVLSSRYKWGTVIKAVMDLVPGRVSSIRYIIGYSCKAVTTEDEKTAVRKA
VISDAVGAQLFQQQAFSQWGPGPLTGSGRTYSIRDNAQVPPQPMCFDDPYKCGDPVPGRV
LSSRYKWGTVIKAVMSGGIVSSIRYIIGYSCKAVTSEHDKHHIIFIHPKKEVSQQAFSRT
RIEICKGPGTQKQGTWYPQDCDVKRTKRQLSELMR
NT seq
3708 nt
NT seq
+upstream
nt +downstream
nt
atggactcaggggatggctctggcccaaaacagaggaacaggtcatgtcaaaatggtaat
cttactccgtcttcttcgacttgtgctgtgaatattggaaaagagggtgtgggttctggg
aggaaaagaaaaatgttagtttctgaagatgcaacaaagttcagtccagcaacttgtgag
cctatcattggacgggttttcgttgaggaaatacctaatgatgatgaggatgatacggat
gattttgaggatgataatgttgttatcattgtagaggaggaagagagtaatatgttgaat
gaaaaagatgaggaggttgtttcatctacctcaagcatgaagtcggtggaagtgcatact
gatagcacctcatcttctgagtctgaatcagaagatgaaaagaatgaagcaggagaaaaa
gagtcgaatgtggggttagcacctgagcttgttgttgagagtgaaaagcagaagaaaggc
ggatcatatcttcttcgttcacgttcactttctaagtccaaaaagaagaagttgaacaat
ggaactggtagtagcagcccaattctacttactgctgaggaggagtctgatggcgaggag
tctaaatctgaagaagattgcgaggttgagtactcggtgaagaatgttgttcagaaggat
gtcgttcaaaaggacaggaggattggaaaaaagtttcttgaagattcggaatttatgaaa
tttgttattgattccatcataaatgtcgatgatcatgataaaattactccttttgaaaag
aagaaacgggttcctgtcaaggaaacacttcctttagtatttcggtttgaagacgaggaa
cctcctccccctgagaaagaagaatgggaaaaggaagttgaagatctttttgctgaaatg
cagatgtgtatcttagagtcagatattggctttacaaattcatccgcttcgcagatgcag
aaaggagatttaagtgactgtcagatggggaaccacaaacttgttctagatgaacaaatt
ggactcatctgtaaagtttgtccctatgtgcatttggagatcaagtacatcttcccttct
tttgctcaaagaactcgagggagatatgaaagaaaacatttaggacaaccgccgtcactc
ttggatgttggtggcttcagattctctgattcttctgaagtccaagattctctgattaat
gaagaaggaaccgtgtgggatttagttccacaaagtgccaaatcaaccatgcatcctcat
caacgtggtggatttgaatttatgtggaaaaacgttgccggagatataaatctcgagagg
ctgagacagcccctatctgatagcaaaggaggatgcataatctcacatccacctggaacc
gggaaaacccgtctcaccctagtatttcttcagtcgtatttgaagctgtttccaaagtct
cgacctgtaatcatagctccttccagcttgctgcttaactgggaagctgagttccagaaa
tgggaggtggacattcccttccacaacttgaacagcaaagatttctctttacaggaagat
gaagctacagtgagtgtgtttcgctgtttatcccatccgggaaagagaaatccacacctt
atacgaatggtgaagctgggatcctgggttaaaggtaatagcgttttggggatcagttat
gatttgttcagaattcttaccggagatgatggagacggttatgttaagccgattagagaa
atccttcttaaatatcctggtcttctggtacttgaagaagggcacactgctcggaatgag
caaagccttgtctggaaagctttgaaaaaggttgaaacagagaagcgcatagttttgtct
gggactcctttccagaataacatcaaggagttatacaacactctctgcgtcgtcagtcca
aagtttgctgcagatttggagcagaaatgggcttctcttagcagttccatcgacaagaat
gcccgagcattggaagagcttagggacattatttcaccactagtccataagtgtagtgaa
aatgtaaagaaggtaagccttccgggtataagggacactgtagttcacctgaaacccaca
gatttgcagaaggagttgcttagaaggattcctgagaatccaagctccttttatgaacaa
aatctggtgtctcttatctctgttcatccttcattagtggccaataggaaggagttctct
gacttagaaagtcagctaaaagagagaggttgtcggttggatccagataccggagtaaaa
atgaaatttgttgttgagcttatcagactttgcggtgggatgaaggagagggttataata
tttagccaactacttgatcctctaaacctgatcaaggagcaactcagttctctctttgga
tggactttaggtcgggagattctctacatggatgggaagcttgatgtgaagcagcggcag
atatctataaattctcttaatgaccgtaagagtgatgtaaaagtgctgcttgcatccata
aaagcgtgttcagaaggaataagtctgataggggcctcaagagtggttttgcttgacgtt
ctctggaatccctcaatagaagagcaagccatcagtcgagcttacaggaatgggcagacc
aaatttgtgcatgtttactgtccagtaacatcaaaatgggaggttgacaagattgaacaa
cagacgagaaagaagtaccattcagatgttcttttgtctaggaatcatgaagccaagatg
gatccttcatgttgtgagtcagaggataccatactagtatccatgtttgagcatgagggc
ctccgtcatatttttgaaaagctctctcatgcaccacgtgtgctgccgcctactacatgc
attgattcttgtaaccaacctccaaaaccaagcaataagttggagcatttttttgggtac
ttgttagaggaatttttgatgccatccatcattacaggtactttgatgcagattcacatg
aagaatgcaaataagattaggattttcatcacccacaagatgttattgtgttttgatgat
cctcacaaatgcggggacccggttcctggcagagtgctctcgtccagatacaaatggggt
acagtcataaaagctgtcatggacctggtaccaggcagagtttcctccatcagatacata
attggttacagctgtaaagctgtcacgacagaggacgaaaagacagctgtcagaaaagct
gtcatctctgatgcagtaggtgcacagcttttccaacagcaggccttcagccaatgggga
cctggtccattgactggtagtggacgcacatattccatcagggataatgcacaagtaccc
cctcaacctatgtgttttgatgatccttacaaatgcggggacccggttcctggcagagtg
ctctcgtccagatacaaatggggtacagtcataaaagctgtcatgtcaggtggtatagtt
tcctccatcagatacataattggttacagctgtaaagctgtcacgtcagagcatgacaaa
caccatattatattcattcatccaaagaaggaagtcagccaacaagccttttcaagaact
cgtatagaaatttgcaagggacctggtacccaaaagcaagggacctggtacccgcaagac
tgtgacgtgaaaaggacgaaaagacagctgtcagaactgatgcggtag
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