Solanum lycopersicum (tomato): 138347809
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Entry
138347809 CDS
T02665
Name
(RefSeq) putative E3 ubiquitin-protein ligase SINA-like 6
KO
K04506
E3 ubiquitin-protein ligase SIAH1 [EC:
2.3.2.27
]
Organism
sly
Solanum lycopersicum (tomato)
Pathway
sly04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
sly00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
138347809
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
sly04121
]
138347809
Enzymes [BR:
sly01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
138347809
Ubiquitin system [BR:
sly04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
SINA (Seven in absentia) proteins
138347809
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Sina_ZnF
Sina_RING
DUF4729
Motif
Other DBs
NCBI-GeneID:
138347809
NCBI-ProteinID:
XP_069152396
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All DBs
Position
3:7952344..7955710
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AA seq
375 aa
AA seq
DB search
MIRVNHSSSSEEEEEMARFSVGRDEHDNDEGGPCNSSTSVCKRRRTTAGPFSRGVVIRQQ
EEVEERERERVVQEKVEEEAEEEDWGSESEGNFRSSGDRRVPVRESEVLRENRSISGESM
YQNFEDSIINRSISVTLLDPDVLDCPICFEHLCVPVFQCGNGHIACAPCCIKIANKCPSC
CLPIGYNRCRAMENVLESLKVSCVNNRYGCKEILNLSKKTDHENACIYVPCFCPSHGCDF
IGTSAKVYAHFSKKHASSAEHISFNAVHPIYIEKDQRYIILQMRTEGILFIVNHASDRVG
SAINIICVGQARQKRRFSYKLVVTDGESSFKLESVAESVPNWSEDSPMKKFLVVPKDVVN
SSARLKLDVLIEEKE
NT seq
1128 nt
NT seq
+upstream
nt +downstream
nt
atgataagagtgaaccattcatctagcagcgaagaagaagaagaaatggcgagattttca
gttggaagagatgaacatgataatgatgaaggaggaccctgtaactccagcacatctgta
tgcaagagacggaggactaccgccggacctttctctcgcggcgtcgtaatccgtcaacaa
gaagaagtagaagaaagagaaagggaaagggttgttcaggaaaaagtagaggaagaggca
gaggaggaggattggggatcggaatctgagggaaatttccgatcgagcggtgatcggagg
gtgccagttcgtgaatccgaggttttaagagagaacaggtctatttctggtgagagcatg
tatcagaattttgaggattcaatcataaacaggtcaatttctgtgacgttattggatccg
gatgtgttggattgcccgatctgctttgaacatctctgtgttcctgtctttcagtgtggg
aatgggcacatagcatgtgccccttgctgcatcaagattgctaataagtgtccatcatgc
tgtttgccaattggatataaccgttgtcgagctatggagaatgttctagaatctctgaaa
gtgtcatgcgtgaacaataggtatggttgtaaggagattctgaatcttagtaagaaaact
gaccatgaaaatgcatgcatctatgtgccttgtttttgtccttcccatggctgtgacttt
ataggtacttcagcaaaggtatatgcacattttagcaagaaacatgcttcttccgcagag
cacatttctttcaatgctgtccatccaatttatattgaaaaagaccaaaggtacataatt
cttcaaatgagaacagaaggtatactttttatcgtcaaccatgctagtgaccgtgttggg
agtgctatcaacatcatctgtgttggacaagctaggcagaagagaaggttctcatacaag
cttgtagtaacagatggggaaagttcttttaaactagaatccgttgcagagagtgtgcca
aactggtcagaagatagtcctatgaagaaattccttgtggtcccaaaagatgtcgttaat
tccagtgctcgactgaagttggatgttctcatagaagagaaggaatga
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