Solanum lycopersicum (tomato): 3950412
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Entry
3950412 CDS
T02665
Symbol
rpoA, LyesC2p038
Name
(RefSeq) RNA polymerase alpha subunit
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
sly
Solanum lycopersicum (tomato)
Pathway
sly03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sly00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
3950412 (rpoA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sly03021
]
3950412 (rpoA)
03400 DNA repair and recombination proteins [BR:
sly03400
]
3950412 (rpoA)
Enzymes [BR:
sly01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
3950412 (rpoA)
Transcription machinery [BR:
sly03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
3950412 (rpoA)
DNA repair and recombination proteins [BR:
sly03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
3950412 (rpoA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
RNA_pol_A_CTD
RNA_pol_L_2
Motif
Other DBs
NCBI-GeneID:
3950412
NCBI-ProteinID:
YP_008563120
UniProt:
Q2MI69
A0A0C5CUT9
LinkDB
All DBs
Position
Pltd:complement(79843..80856)
Genome browser
AA seq
337 aa
AA seq
DB search
MVREKVTVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT
CITRVKSEKVPHEYSTITGIQESVHEILMNLKEIVLRSNLYGTSEASICVKGPGYVTAQD
IILPPYVEIVDNTQHIASLTEPIDFCIGLQIERNRGYLIKTPHNFQDGSYPIDAVFMPVR
NANHSIHSYGNGNEKQEILFIEIWTNGSLTPKEALHDASRNLIDLFIPFLHMEEDNLYLQ
DNQHTVPLSPFTFHDKLAKLIKNKKKIALKSIFIDQSELSSRIYNCLKMSNIYTLLDLLN
NSQEDLMKIEHFRSEDIKQILDILEKYFVIDLAKNKF
NT seq
1014 nt
NT seq
+upstream
nt +downstream
nt
atggttcgagagaaagtaacagtatctactcggacactacagtggaagtgtgttgaatca
agaacagacagtaaacgcctttattatggacgctttattctgtctccacttatgaaaggc
caagccgacacaataggcattgcgatgcgaagagctttacttggggaaatagaaggaaca
tgtatcacacgtgtaaaatctgagaaagtaccacatgaatattctaccataacgggcatt
caagaatcggtacatgaaattttaatgaatttgaaagagattgtattgagaagtaattta
tatggaacttctgaggcgtctatttgtgtcaagggtcctggatatgtaactgctcaagat
atcatcttgccaccttatgtggaaatcgttgataatacacaacatatagctagtttaacg
gaaccaattgatttttgtattggattacaaatagagagaaatcgtggatatcttataaaa
acgccacataactttcaagatggaagttatcctatagatgctgtattcatgcctgttcga
aacgcgaatcatagtattcattcttatgggaatgggaatgaaaaacaagagatacttttt
atcgaaatatggacaaacggaagtttaactccgaaagaagcacttcatgacgcatcccga
aatttaattgatttatttattccctttttacatatggaggaagacaacttatatttacag
gacaatcaacacacggttcctttatccccttttacctttcatgataaattggctaaactc
ataaaaaacaaaaaaaaaatagcattgaaatcgatttttattgaccaatcagaattgtct
tccaggatctataattgcctcaaaatgtccaatatatatacattattggaccttttgaat
aacagccaagaagatcttatgaaaattgaacattttcgtagcgaagatataaaacagata
ttggacattttagaaaaatatttcgtaattgatttagcaaaaaataagttttaa
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