Solanum lycopersicum (tomato): 543534
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Entry
543534 CDS
T02665
Symbol
MSI1
Name
(RefSeq) WD-40 repeat-containing protein MSI1
KO
K10752
histone-binding protein RBBP4
Organism
sly
Solanum lycopersicum (tomato)
Pathway
sly03082
ATP-dependent chromatin remodeling
sly03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
sly00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
543534 (MSI1)
03083 Polycomb repressive complex
543534 (MSI1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
sly03036
]
543534 (MSI1)
Chromosome and associated proteins [BR:
sly03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
CAF-1
543534 (MSI1)
Histone modification proteins
HAT complexes
HATB complex
543534 (MSI1)
HDAC complexes
Sin3A-HDAC complex
543534 (MSI1)
Polycomb repressive complex (PRC) and associated proteins
PRC2.1
543534 (MSI1)
PRC2.2
543534 (MSI1)
Centromeric chromatin formation proteins
Kinetochore proteins
MIS16-MIS18 complex
543534 (MSI1)
Heterochromatin formation proteins
Other heterochromatin formation proteins
543534 (MSI1)
Chromatin remodeling factors
NuRD complex
543534 (MSI1)
NuRF complex
543534 (MSI1)
NuRF complex (fruit fly)
543534 (MSI1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
CAF1C_H4-bd
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_CAF1B_HIR1
Beta-prop_EIPR1
Beta-prop_RIG_2nd
Beta-prop_TEP1_2nd
WDR55
WD40_WDHD1_1st
Beta-prop_EML_2
WD40_RFWD3
WD40_MABP1-WDR62_2nd
Beta-prop_WDR75_1st
Beta-prop_EML
Beta-prop_WDR90_POC16_2nd
EIF3I
ANAPC4_WD40
Beta-prop_RIG_1st
eIF2A
Beta-prop_HPS5
MIOS_WD40
NBCH_WD40
WD40_MABP1-WDR62_1st
Beta-prop_NUP159_NUP214
Beta-prop_DCAF4
Motif
Other DBs
NCBI-GeneID:
543534
NCBI-ProteinID:
NP_001234002
UniProt:
O22466
LinkDB
All DBs
Position
1:complement(88995710..89000632)
Genome browser
AA seq
424 aa
AA seq
DB search
MGKDEDEMRGEIEERLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPSGKD
YSVQKMILGTHTSENEPNYLMLAQVQLPLEDAENDARHYDDDRSEFGGFGCANGKVQIIQ
QINHDGEVNRARYMPQNPFIIATKTVSAEVYVFDYSKHPSKPPLDGACNPDLRLRGHSTE
GYGLSWSQFKQGHLLSGSDDSHICLWDINATPKNKALEAMQIFKVHEGVVEDVAWHLRHE
YLFGSVGDDQYLHVWDLRTPSVTKPIQSVVAHQSEVNCLAFNPFNEWVVATGSTDKTVKL
FDLRKISTALHTLDCHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAE
DGPPELLFIHGGHTSKISDFSWNPCEDWVVASVAEDNILQIWQMAENIYHDEDDLPGDDA
PKGP
NT seq
1275 nt
NT seq
+upstream
nt +downstream
nt
atggggaaagacgaagatgagatgcggggtgaaattgaggagaggctgataaacgaggag
tacaagatttggaagaagaatactccttttctttacgatctggttattactcacgcgctt
gaatggccttcgctcaccgtcgaatggttaccggaccgggaagagccgtcgggaaaggat
tattccgttcagaagatgattttggggactcatacatcggaaaatgagcctaactatctc
atgcttgctcaggttcagctgcctcttgaggatgctgagaatgatgcccgccactatgat
gatgatcggtctgaatttggcggatttggttgtgccaatggcaaggtacaaataatccag
caaataaatcacgatggagaggttaatcgggctcgatatatgccccaaaacccatttatc
attgcaactaagacagttagtgctgaagtatatgtttttgactacagtaaacatccatct
aagcctcctctagatggtgcatgcaatccagatttgaggttaagaggccacagtacagag
gggtatggtttgtcttggagtcaatttaagcagggtcatctattgagtggttcagatgac
tcacatatatgtttatgggacattaatgccactcccaaaaataaggctctagaggctatg
cagatatttaaggttcatgaaggtgttgttgaggatgtagcttggcatctgaggcatgag
tatttatttggctctgttggggatgatcagtatttgcacgtatgggatctgcgaactcca
tcagtgaccaagcctatacaatctgtagttgcacatcaaagtgaggttaactgcttagct
ttcaacccctttaatgaatgggttgtagcaacggggtctacagacaagacagttaaatta
tttgatctacgcaagatttctactgcacttcatactttggattgtcacaaggaggaagtt
ttccaggttgggtggaatccaaagaatgaaaccattttagcttcttgttgccttggtagg
agactcatggtttgggatctcagcaggatcgacgaggaacaaactccagaagatgcggaa
gatggaccaccagagttgctctttattcatggtggccacacaagtaaaatttcagacttc
tcatggaacccatgtgaagattgggtcgttgctagtgttgccgaggataatatactacaa
atctggcagatggctgaaaacatctaccatgatgaagatgacctgcctggagatgatgcc
cccaaaggcccttag
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