Solanum lycopersicum (tomato): 544176
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Entry
544176 CDS
T02665
Symbol
phyA
Name
(RefSeq) Phytochrome A
KO
K12120
phytochrome A
Organism
sly
Solanum lycopersicum (tomato)
Pathway
sly04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
sly00001
]
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
544176 (phyA)
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GFIT
Motif
Pfam:
PHY
PAS
PAS_2
GAF
HATPase_c
HisKA
PAS_9
PAS_4
PAS_8
Motif
Other DBs
NCBI-GeneID:
544176
NCBI-ProteinID:
NP_001234490
UniProt:
Q41331
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Position
10:25835838..25842219
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AA seq
1123 aa
AA seq
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MSSSRPSQSSTTSSRSKHSARIVAQTSIDAKLHADFEESGDSFDYSSSVRVTSVAGDEEK
PKSDKVTTAYLHQIQKGKFIQPFGCLLALDEKTLKVIAFSENAPEMLTMVSHAVPSVGEH
PVLGIGTDIRTIFTGPSGAALQKALGFGEVSLLNPVLVHCKNSGKPFYAIVHRVTGSLIL
DFEPVKPYEVPMTAAGALQSYKLAAKAITRLQSLPSGSMERLCDTMVQEVFELTGYDRVM
GYKFHEDDHGEVVSEITKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMICDCRAKHVKV
VQDEKLPFDLTLCGSTLRAPHYCHLQYMENMNSIASLVMAVVVNDGDEEGESSDSSQSQK
RKRLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKELELENQFLEKNILRTQTLLC
DMLMRDAPLGIVSQSPNIMDLVKCDGAALLYKNKIHRLGMNPSDFQLQDIVSWLCEYHTD
STGLSTDSLYDAGFPGALALGDAVCGMAAVRISDKDWLFWFRSHTAAEVRWGGAKHEPGE
KDDGRKMHPRSSFKAFLEVVKTRSIPWKDYEMDAIHSLQLILRNAFKDAEVVNSNTNSIY
KKLNDLKIDGMQELESVTAEMVRLIETALVPILAVDVDGQVNGWNTKIAELTGLPVDEAI
GKHLLTLVEDSSVDTVNKMLELALQGKEEKNVEFEIKTHGPSRDSSPISLIVNACASKDV
RDNVVGVCFMAHDITGQKSIMDKFTRIEGDYRAIIQNPHPLIPPIFGTDQFGWCSEWNTA
MTKLTGWRRDDVMDKMLLGEVFGTQAACCRLKNQEAFVNFGVVLNNAITGQESEKIPFGF
FARYGKYVECLLCVSKRLDKEGAVTGLFCFLQLASHELQQALYVQRLSEQTALKRLKVLA
YIRRQIRNPLSGIIFSRKMLEGTSLGEEQKNILHTSAQCQRQLNKILDDTDLDSIIDGYL
DLEMLEFKLHEVLVASISQVMMKSNGKNIMISNDMVEDLLNETLYGDSPRLQQVLANFLL
VSVNATPSGGQLSISGRLTKDRIGESVQLALLEFRIRHTGGGVPEELLGQMFGSEADASE
EGISLLVSRKLVKLMNGEVQYLREAGQSTFIISVELAVATNSS
NT seq
3372 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtcttcaagacctagccaatcttccaccacttcatcaagatcaaagcacagtgct
aggatcgttgcacagacctctatagatgcaaagctgcatgcagactttgaggagtcaggt
gattcctttgactattcaagctcagtgagggttacaagtgtcgctggagatgaggaaaaa
ccaaagtcagacaaagttaccaccgcctaccttcatcagatccaaaagggcaagtttatc
cagccatttggttgtctgttagccctggatgagaaaacattaaaggtcatagcattcagt
gagaatgcccctgaaatgctgaccatggttagccatgctgttccaagtgttggtgagcat
ccagttcttggcatcgggactgatatcagaacgatcttcactggtcctagtggcgcagca
ttgcagaaagccttggggtttggggaggtttctctgttaaatcctgtccttgttcactgt
aaaaattctggaaagccattttatgcaattgttcatagggttacaggtagcttaatcctt
gattttgagcctgtgaagccctatgaagtacccatgactgctgcaggggccctgcagtca
tataaactagcagccaaagccattactcgcttgcagtccttgcccagtggcagtatggaa
agactctgtgacacaatggttcaggaggtttttgaactcacaggttatgacagggtgatg
ggatataagtttcacgaggatgatcatggagaggtggtgtctgagatcacaaagcctggc
ctcgagccttaccttggtttacattatcctgctacagatattccacaggctgcacggttt
ttgtttatgaagaataaggtccgaatgatttgtgattgccgagcaaagcatgtgaaggta
gtccaagatgagaagcttccatttgatttaacattgtgcggctctactcttagggcccct
cactactgccatttacagtatatggagaacatgaattcaattgcatcacttgtaatggca
gttgtggtcaatgacggggatgaagaaggagaaagctctgattcttcacaatctcaaaaa
agaaaaaggctatggggcctggttgtttgccacaacacgaccccaaggttcgttcccttt
ccactgaggtatgcatgtgagtttcttgcacaagtctttgccatacacgtcaacaaggaa
ctggaattggaaaatcaattccttgagaaaaatattctgcgtactcagactctcttgtgt
gatatgctgatgcgagatgctcccctaggtatcgtgtcacagagccccaacattatggat
cttgtcaaatgtgatggtgcggctttgctctataagaataagatacatcgattaggaatg
aacccaagtgactttcagctgcaggatatagtatcatggctttgtgagtatcatacagat
tccacaggcttgagtacggatagcttgtatgatgctggttttcctggggctcttgctctt
ggtgatgcagtctgtggtatggcagctgtgagaatatctgataaggactggctgttctgg
ttcaggtcacacactgctgctgaagttagatggggtggtgcaaagcatgaacctggtgag
aaggatgatggcaggaaaatgcatcctaggtcatcattcaaagcattcctggaagttgtc
aagacaaggagtataccctggaaggattatgagatggatgcaatccactctttgcagctc
atactaagaaatgctttcaaggatgctgaggttgtgaattcaaataccaattccatctat
aagaagcttaatgatctaaagattgacggaatgcaggaactagaatcagtgactgctgaa
atggtccgcttaattgaaacagctttagttcctatattagcagttgatgttgatgggcag
gttaatggatggaacacaaaaatagctgaattaactggtcttcctgttgatgaagcaatt
gggaaacatcttctcactctcgtggaggattcatcagttgataccgtgaataagatgttg
gaattagcattgcaggggaaagaggaaaaaaatgtagagtttgaaataaaaacacatggg
ccgtcaagagattctagtccaatcagcttaatcgtgaatgcatgtgcaagcaaagatgtt
cgggataatgttgtgggtgtgtgttttatggctcatgatataactggacaaaaaagcatc
atggacaagttcacccgaatcgaaggtgactatagagcgattatccaaaatcctcaccca
ttgatcccaccaatatttggcactgatcaatttggctggtgttctgagtggaacactgca
atgaccaagttaactggatggcggcgtgatgatgttatggataaaatgctgttaggggag
gtttttgggacacaggcagcttgctgccgtctcaagaatcaagaagcgtttgtaaatttc
ggagttgtactaaacaatgctatcactggtcaagaatctgagaagattccttttggtttc
tttgcacgttacgggaaatatgtggagtgcttactctgtgtgagcaaaaggttagataaa
gagggtgcagtcacgggactcttttgtttcctgcaacttgcaagccatgagttgcaacaa
gctctttatgttcaacgattatcagaacaaactgcgttgaaaagattgaaagtattagct
tacataaggaggcaaattaggaatcctctttctgggattatattctctcggaagatgcta
gaggggactagcttgggcgaagagcagaaaaatatactgcatacaagtgcacagtgtcag
cgtcagctcaacaaaattcttgatgatacagatcttgatagcatcatagatggttatttg
gatctggagatgctcgagtttaagctgcatgaagtattggtagcatctataagtcaagtc
atgatgaagagcaacggaaagaatataatgatctcgaatgacatggttgaagatcttctt
aatgaaactttatacggagatagtccgaggcttcaacaagtccttgctaactttttgtta
gtatctgtgaacgctacaccaagtggcggccagcttagtatttcaggcaggctaacaaaa
gatcgtataggagaatctgttcagcttgctctcttggaattcaggataagacatacaggg
ggtggagtgccagaagaattgcttggccaaatgtttggtagtgaagccgatgcatctgaa
gaagggatcagcttacttgtcagcagaaaactggtcaagctgatgaatggggaagttcag
tatctaagagaggctgggcaatcaactttcattatatccgttgaactcgcagtggctacc
aactcaagctga
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