KEGG   Solanum lycopersicum (tomato): 544252
Entry
544252            CDS       T02665                                 
Name
(RefSeq) WD-40 repeat protein
  KO
K13111  WD40 repeat-containing protein SMU1
Organism
sly  Solanum lycopersicum (tomato)
Brite
KEGG Orthology (KO) [BR:sly00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:sly03041]
    544252
Spliceosome [BR:sly03041]
 Complex B
  Other components
   Complex B specific factors
    544252
SSDB
Motif
Pfam: Beta-prop_WDR5 WD40 Beta-prop_THOC3 Beta-prop_WDR3_1st WD40_Prp19 WD40_WDHD1_1st WD40_CDC20-Fz WDR55 Beta-prop_WDR36-Utp21_2nd Beta-prop_EML_2 EIF3I Beta-prop_WDR3_2nd Beta-prop_TEP1_2nd Beta-prop_CAF1B_HIR1 WD40_Gbeta WD40_MABP1-WDR62_2nd Beta-prop_WDR36-Utp21_1st Beta-prop_EML LisH_TPL ANAPC4_WD40 Beta-prop_WDR90_POC16_2nd Beta-prop_WDR75_1st NBCH_WD40 WDR90_beta-prop_4th Beta-prop_TEP1_C Beta-prop_IFT122_1st Beta-prop_Aladin Beta-prop_ACSF4 Beta-prop_VPS8 Beta-prop_SCAP Beta-prop_DCAF4 Beta-prop_WDR41 Beta-prop_Nup120_160 Beta-prop_NWD2_C Beta-prop_RIG_2nd Ge1_WD40 Beta-prop_EIPR1 Beta-prop_SPT8 Beta-prop_IFT140_1st Beta-prop_Vps41 WD40_MABP1-WDR62_1st Beta-prop_WDR35_TULP_N Beta-prop_NUP159_NUP214 DUF7165 Beta-prop_HPS5 WD40_RFWD3 Beta-prop_WDR75_2nd VPS8_N Beta-prop_WDR19_1st Beta-prop_LRRK2 Beta-prop_IFT122_2nd Beta-prop_IP5PC_F zf_topless
Other DBs
NCBI-GeneID: 544252
NCBI-ProteinID: NP_001234868
UniProt: A0A3Q7HRX8 Q94IP9
LinkDB
Position
6:complement(42849033..42860597)
AA seq 514 aa
MSSTLEIEARDVIKIVLQFCKENSLHQSFQTLQNECQVSLNTVDSLETFIADINSGRWDA
VLPQVAQLKLPRKILEDLYEQIVLEMIELREMDTARAILRQTNVMGVMKQEQPERYLRLE
HLLVRTYFDPHEAYNDSTKEKRRAQISQALSAEVSVVPPSRLMALIGQALKWQQHQGLLP
PGTQFDLFRGTAAMKQDEEDMYPTTLGHTIKFGKKSHPECSRFSPDGQFLVSCSVDGFIE
VWDHISGKLKKDLQYQADETFMMHDDAVLCVDFSRDSEMLASGSQDGKIKVWRIRTGQCL
RRLERAHSQGVTSLVFSRDGTQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTF
DGSRVITASSDGSVKVWDAKTTECLQTFRPPPPLRGGDASVNSVHLFPKNNEHIIVCNKT
SSIYLMTLQGQVVKSFSSGKREGGDFVAACLSPKGEWIYCVGEDRNLYCFSYQSNKLEHL
MKVHEKDVIGITHHPHINLVATYGEDCTMKLWKP
NT seq 1545 nt   +upstreamnt  +downstreamnt
atgtcttctacactggaaatcgaagctcgagatgtcattaagatagttcttcaattctgc
aaggagaactctctgcatcaatctttccagacattgcaaaatgagtgccaggtttctctt
aatactgtggatagccttgaaacttttatagctgatattaatagtggaagatgggatgct
gtactacctcaagttgcacaacttaagcttcctagaaagatactggaggatttatatgag
cagattgtcttagaaatgattgaacttcgagagatggatactgcacgagctattttaagg
caaaccaacgtgatgggtgtcatgaaacaggagcaaccagaaagatatttgcggctcgag
catctactagtccggacttactttgatccccatgaggcttataatgactcaaccaaggag
aaaaggcgtgcccaaatttcccaagcgctttctgctgaggtttctgttgttccaccatca
cgcctaatggctttgattggtcaagccttgaaatggcaacaacatcaaggtttacttcca
cctggaacacagtttgatctattccgaggaacagctgctatgaaacaagatgaagaggat
atgtatccgacaacacttggtcacactattaagtttggtaagaagagtcatccagaatgt
tctaggttctcaccggatggacaatttcttgtctcatgctcagttgatggatttattgag
gtctgggatcacataagtggaaaactgaagaaggatcttcaatatcaggctgatgaaact
tttatgatgcatgatgatgctgtcctttgtgttgattttagcagagactcggagatgctc
gcgtctgggtcacaagatggaaaaataaaggtctggcgcataaggactggtcagtgcttg
cgtcgccttgaacgtgcacattctcagggtgtcaccagtcttgtcttctctcgagatgga
actcagatcttaagcacatcctttgacagcacagcgagaattcatggcctgaagtcaggt
aaattgttaaaagaattccgcggacattcttcttatgtgaatgatgccatctttaccttt
gatggatctcgagtcatcaccgcatctagtgacggctcagtgaaggtctgggatgccaaa
actacagagtgtttgcagacatttagaccacctcctcctttaaggggtggcgatgcatct
gtgaattctgtccatcttttccctaagaataatgaacacattatagtgtgcaataagaca
tcatctatttatctgatgacacttcaaggacaggtcgtcaaaagtttctcatctggtaaa
agagaaggtggagactttgtggctgcttgtctatcaccaaaaggagaatggatatactgt
gtaggtgaagacagaaacttgtactgctttagttatcaatcaaacaaactggagcatctg
atgaaggtacatgaaaaggatgtaattggtatcactcaccatccccatataaaccttgtt
gccacatatggagaagactgcaccatgaagctatggaagccttaa

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