Solanum lycopersicum (tomato): 544278
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Entry
544278 CDS
T02665
Symbol
rpb2
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
sly
Solanum lycopersicum (tomato)
Pathway
sly03020
RNA polymerase
sly03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sly00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
544278 (rpb2)
09124 Replication and repair
03420 Nucleotide excision repair
544278 (rpb2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sly03021
]
544278 (rpb2)
03400 DNA repair and recombination proteins [BR:
sly03400
]
544278 (rpb2)
Enzymes [BR:
sly01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
544278 (rpb2)
Transcription machinery [BR:
sly03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
544278 (rpb2)
DNA repair and recombination proteins [BR:
sly03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
544278 (rpb2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_4
RNA_pol_Rpb2_5
PRISE
Motif
Other DBs
NCBI-GeneID:
544278
NCBI-ProteinID:
NP_001233889
UniProt:
Q42877
LinkDB
All DBs
Position
2:59200393..59207863
Genome browser
AA seq
1191 aa
AA seq
DB search
MDMEDEYEPQYNVDDDEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDE
SADIEIRPESQHNPGHQSDFAETIYKINFGQIYLSKPMMTESDGETATLFPKAARLRNLT
YSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELG
ECPLDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAFVAEVRSMADTQNRPPST
MFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFNDTQ
MMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEY
CETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR
GYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYAS
TLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSA
AYPILEFLEEWGTENFEEISPAVIPQATKIFVNGTWVGIHRDPDMLVRTLRRLRRRVDVN
TEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLMIKKKDIQTLQQRESPDEGGWHDLV
AKGYIEYIDTEEEETTMISMTINDLVQARLNPGDAYSDTYTHCEIHPSLILGVCASIIPF
PDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLP
AGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPD
RASTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDDAQGQASRYTRKDHSTS
LRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMP
WTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALH
KCGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAE
GRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFE
CRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKDVKLAKDQKKKGA
NT seq
3576 nt
NT seq
+upstream
nt +downstream
nt
atggatatggaggatgaatatgaaccccaatacaatgttgacgatgatgaagaggagata
acccaagaagatgcttgggctgtgattagtgcttactttgaggagaagggtcttgttcgt
caacaactagattcgtttgatgagttcattcagaataccatgcaagaaatcgttgatgaa
tctgctgatatagagatccgtcctgagtcccagcataaccctggtcaccaatctgacttt
gctgagactatctacaaaatcaattttggtcagatttatttgagtaagccaatgatgaca
gagtcagatggtgaaactgctaccttatttccaaaggctgcgaggttgaggaatctgaca
tattctgctcctttgtacgttgatgtcacgaaaagagtcattaagaaagggcatgatggt
gaagaggttactgaaactcaggacttcacaaaagtcttcattggaaaggttcctataatg
ctgcgttcaagttactgcacattatatcaaaattctgagaaagatctaacagagcttgga
gaatgtccattagatcaaggcggttatttcattataaatggaagtgaaaaggtcttaatt
gctcaggagaagatgagcacgaaccacgtgtacgtctttaagaagaggcaacctaacaaa
tatgccttcgttgcggaagtcaggtcaatggcagacactcaaaatcgcccaccaagtact
atgttcgtgaggatgctctcaaggactagtgcaaaagggggttcctcgggccaatacatt
cgggcaacacttccgtatatccgtacagagattcctattattatcgtgtttcgagctcta
ggttttgttgctgataaggatatattggaacatatttgttatgatttcaatgatactcaa
atgatggagttgttacgtccgtcgttggaagaagcttttgttattcaaaaccaacaggtt
gctctcgactacatcggaaaaagaggggctacagttggtgttacaagggaaaagaggatt
aagtacgccaaagagattcttcagaaagaaatgcttcctcatgttggggttggagagtat
tgtgaaacaaagaaggcttattattttgggtatatcatccaccggcttctgttatgtgcg
cttggccgcagggctgaggatgatagggatcattacggaaataagagactggatcttgcc
ggtcctttgcttggtgggctgtttcggatgctctttagaaagttgacaagggatgttaga
ggctatgtgcaaaagtgtgttgacaatggaaaagatgtaaatctccaatttgcaatcaaa
gctaagaccattactagtgggctgaaatactctcttgctactggaaactgggggcaagct
aatgcagctggtacaagagctggtgtttcgcaggtgctgaatcgtctgacttatgcctct
actttgtctcacttgcgacggttgaattcccctattggacgagaagggaaactggccaaa
ccaaggcaattgcataattcacaatggggaatgatgtgtcctgcagaaacaccagagggt
caagcatgtgggctggtgaagaatctagctttaatggtttatataacagttggttcagcg
gcatatccaattttggagttcttggaagagtggggtactgagaactttgaggaaatttct
cctgctgttattccacaggctacaaagatctttgtcaatggtacctgggtgggaattcat
cgtgatcctgacatgttggtgagaacattgagacgactcaggaggcgggttgacgtcaat
actgaagttggggtggtccgtgatatccgtttgaaagaacttcgaatttataccgactat
ggcaggtgcagtcgtccattgtttattgtggaaaagcaaaggctgatgatcaagaagaag
gatattcagacactgcaacaacgggaatcacctgacgagggtggctggcacgacctcgtg
gctaagggatacatcgagtatattgacactgaagaggaagaaacaacgatgattagcatg
actataaatgatcttgtgcaagcgcgccttaatcctggcgacgcttattctgatacctat
actcattgcgaaattcacccatcactaatattgggtgtctgtgcgtcaattattccgttt
cctgatcataatcagtctccccgtaatacttatcagtcagctatgggtaagcaagccatg
ggaatttatgtcaccaactaccaatttcggatggacacgttggcctatgtgctttattat
cctcagaagcctcttgtcacaacacgagccatggaacacttgcattttaggcaactacct
gcggggatcaatgcaattgtcgccatctcctgctattctggatacaatcaagaggattct
gtcattatgaaccagtcatctattgatcgtggatttttccgatctctatttttccgttcg
tacagggatgaggagaaaaagatggggacattggtcaaggaggattttggacgtcctgat
agagcatctactatgggtatgcgccatggttcgtacgataagttggatgacgatggtctt
gcccctccaggaactagagtttctggtgaggatgttatcattgggaagaccactcccatt
tctcaggatgatgcacaagggcaagcctctcgctatacgaggaaagatcacagtactagt
ctccgccatagtgaaactggaatggtggatcaggttctattaacaacgaatgctgacggg
ctcagatttgttaaagtgagggtcagatcagtccgtattcctcaaattggtgacaagttt
agcagtagacatggtcagaagggaacagttggtatgacatatacacaagaagatatgcca
tggaccgtggaaggcattactcctgatattattgtaaatcctcatgctattccttctcga
atgactattggtcagctgattgaatgtattatggggaaggttgccgcacacatgggaaaa
gaaggtgatgccactccctttacggatgttactgtggataacatcagtaaagctctgcat
aaatgtggttaccagatgcgtggttttgagaccatgtacaatggtcatactgggcggcgg
cttagtgcaatgatattccttggtcccacatactaccagcggctgaagcatatggttgat
gacaagattcattctagaggcagaggccctgtgcaaatcctcacaaggcagcctgcggaa
ggtcggtcacgtgatggtggtcttcgttttggagagatggagcgagattgtatgattgct
catggtgctgctcattttctcaaggagcggttatttgaccaaagcgatgcgtacagagtt
cacgtttgtgagcgctgtgggctgatagccattgccaacctcaagaagaattcttttgaa
tgcagaggttgcaagaacaaaactgatatcgtccaggttcacattccctatgcatgcaaa
ctgcttttccaggagctaatggctatggctatagctccaagaatgcttacaaaggatgtc
aagctagccaaagatcaaaagaagaaaggagcttga
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