Solanum lycopersicum (tomato): 778257
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Entry
778257 CDS
T02665
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
sly
Solanum lycopersicum (tomato)
Pathway
sly03020
RNA polymerase
sly03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sly00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
778257
09124 Replication and repair
03420 Nucleotide excision repair
778257
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sly03021
]
778257
03400 DNA repair and recombination proteins [BR:
sly03400
]
778257
Enzymes [BR:
sly01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
778257
Transcription machinery [BR:
sly03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
778257
DNA repair and recombination proteins [BR:
sly03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
778257
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
Motif
Other DBs
NCBI-GeneID:
778257
NCBI-ProteinID:
XP_004232527
UniProt:
A0A3Q7F7G2
LinkDB
All DBs
Position
2:complement(63007906..63016558)
Genome browser
AA seq
1846 aa
AA seq
DB search
MDLRFPFSPAEVAKVRTVQFGIVSPDEIRQMSVVHIEHGETTERGKPKPGGLSDPRLGTI
DRKMKCETCMANMAECPGHFGHLELAKPMFHIGFMKPVLSILRCVCFNCSKILADEDDPK
FKQAMRIRNPKNRLRKMLDACKNKTKCEGGDEIDVQGQDTEEPVKKSRGGCGAQQPKISI
DGMKMVAEYKMQKKKSDDPEQMPEPVERKQQLSAERVLSILKRVSDEDCLLLGLNPEFAR
PDWMILQALPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGAPAHIIS
EFAQLLQFHIATYFDNDLPGQPRATQRSGRPIKSICSRLKSKEGRIRGNLMGKRVDFSAR
TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
DDGQRLDLRYLKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT
LLGCRKVTKRDTFIEKDVFMNILMWWEDFDGKVPAPVILKPRPLWTGKQVFNLIIPKQIN
LLRYSAWHNDSEKGYITPGDTQVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA
RKFLGHTQWLVNYWLLQQAFSIGIGDTIADASTMEKINETISNAKAKVKELIKAAQEKLL
EAEPGRTMMESFENRVNQVLNKARDDAGSSAEKSLSESNNLKAMVTAGSKGSFINISQMT
ACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIETQK
LDSLKAKKGTFDDMYAYEIDDPNWNPSYMLPEAVEDLKGIREIRSVFDAEVQKLEADRHQ
LGTEIAVTGDNSWPLPVNIQRLVLNAQKTFKIDFRRPSDMHPMEIVEAVDKLQERLKVVP
GDDYLSMEAQKNATLFFNILLRSALASKRVLKEYRLSREAFEWVVGEIESRFLQSLVAPG
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK
PEVGKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTLIEEDVEFVKSYYEMPDEEI
DPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM
NDEAPKGELDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKNSKVQKFDDNEGFKAE
NEWMLDTEGVNLLAVMTHEDVDASRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDGS
YVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDHL
RGVTENIMLGQLAPIGTGGCSLYLNEEMLKQAIEIPLPSYMEGGLEFGMTPGRSPISGTP
YHDGMMSPNYLLSPNMRMSPITDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPT
SPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSY
SPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTS
PSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYNPSARYSP
SLAYSPTSPKLSPSSPYSPSSPSYSPTSPSYSPTSPSYSPSSPTYSPSSPYNNSGTSPDY
SPSSPQYSPSAGYSPSAPGYSPSSTSQYTPRVSERDNRSVKDDKAG
NT seq
5541 nt
NT seq
+upstream
nt +downstream
nt
atggatttgcgcttccccttctcgccggcggaggttgccaaggtccggacggtccagttc
ggcattgtcagccccgacgaaattagacaaatgtctgtggtgcacattgagcatggtgag
actacggagagagggaaaccaaagcctggagggttgagcgatcctcggcttgggacgatt
gatcggaagatgaagtgtgagacgtgtatggcgaacatggctgaatgtccggggcatttt
ggtcaccttgagcttgcgaaacctatgtttcatatagggtttatgaaacctgttcttagt
atccttcggtgtgtctgcttcaattgctccaaaattctggcggatgaggacgatcctaag
ttcaaacaagccatgagaatcaggaatcctaaaaacaggcttagaaagatgttggatgct
tgcaagaacaaaacaaaatgtgaaggaggggatgaaattgatgtacaaggccaagatact
gaagaacctgtcaagaagagtagaggtggctgtggtgcacagcagccaaaaatttcaata
gatggtatgaagatggttgctgaatataagatgcaaaagaaaaaaagtgatgatccggag
cagatgccagaaccagttgaaaggaagcaacaactctctgctgaaagggtgttgagcatt
ctgaagcgggtaagtgacgaagactgcctcttgcttggcctaaatccagagtttgctcgc
ccagattggatgattcttcaagcacttcccataccaccaccacctgttcggccttctgtg
atgatggacacttcatcaaggagtgaggatgatttaacacaccaactggccatgattatt
cgtcacaacgagaatttgaagaggcaggaaaggaatggggcaccggcgcacattatttcg
gaatttgcacagttattgcaatttcatatagctacatattttgataatgatctgcctgga
cagccaagagctacacaaagatcaggtagacctattaaatcaatatgtagtagattaaaa
tcaaaggaaggtcggatcagaggcaatctgatgggtaaaagagtagacttttctgctcgg
actgtgattacccccgatccaactattaacattgatcaattgggagtcccatggagtatt
gctctgaatctcacttatccagaaacagtgacaccatataacattgaaaggttaaaggaa
cttgttgaatatggacctcatccacctcctggtaaaaccggggccaagtatataattagg
gacgacggccaaaggcttgatcttcgatacttgaagaagagcagcgatcaacaccttgaa
ctaggatataaggttgagaggcacttaaatgatggagattttgttctcttcaatcggcaa
cccagtctacataaaatgtctattatgggacataggattaagatcatgccatactcaact
ttccgcttgaatttatctgtcacttctccttacaatgctgattttgatggtgacgaaatg
aacatgcatgttccacagtcgtttgaaaccagagcagaggttctggagcttatgatggtc
cctaagtgtattgtttcaccccaggcaaataggcctgtaatgggtatcgtccaggatacc
cttttaggttgccgcaaagttactaaaagagatacctttatagaaaaggatgtctttatg
aacatcttaatgtggtgggaggattttgatgggaaagtacccgctccagtgattcttaaa
ccaaggccactttggactggaaagcaagtgtttaacctcatcataccaaaacaaataaat
cttttaagatactccgcatggcataatgattccgaaaaaggatacataactcctggagat
actcaagttagaatagagaaaggggagttgctatctggtactctttgcaaaaagaccctt
gggacgtccaccggaagtctgattcatgttatatgggaggaggttgggcctgatgctgct
cggaagtttttgggacatacacagtggcttgttaattattggcttcttcagcaagctttt
agcatcgggataggagatacaattgctgatgcttcaacgatggagaaaattaatgaaact
atctcgaatgcaaaagccaaagtcaaagaacttattaaagctgctcaagagaagctgtta
gaagctgaaccagggcgaactatgatggaatcatttgagaacagagtgaaccaggtgtta
aataaggctcgtgatgatgctggaagcagtgcagagaagagtttatcagagagcaataat
cttaaagctatggttactgctggatcgaagggaagttttatcaacatatctcaaatgact
gcctgtgtggggcaacagaatgttgaaggaaaacgtattccatttggtttcatagaccgt
actcttcctcattttaccaaagatgattatggtccggaaagtcgtggttttgtagagaat
tcatatctccggggactgaccccgcaagagttcttcttccatgctatgggtggtagagaa
ggtctgattgatactgctgtgaaaacttctgagaccgggtacattcagaggcggttagtg
aaggccatggaggatatcatggtcaagtatgacggcactgttaggaattcattgggggat
gtaatccagtttctgtatggggaagatgggatggattctgtttggattgagacacagaag
ctggattctctgaaagcaaagaaaggaacatttgatgacatgtatgcatatgagatcgat
gatcctaactggaacccaagttacatgttgccagaagctgtcgaagatttaaaaggtatt
cgggagattcgtagtgtgtttgatgcggaggtccagaaacttgaagctgatagacatcag
cttgggacagagattgctgtaacgggtgacaattcttggcctcttcctgttaacattcag
aggcttgtcttaaatgcccaaaagacatttaaaatagatttccggaggccctctgacatg
catccgatggagatcgtggaagctgttgataagttacaggagaggcttaaggttgttcct
ggtgatgattatctaagcatggaggctcaaaagaatgctactcttttcttcaatatcttg
ctccgtagtgccttggctagtaaaagggttctgaaggagtataggcttagtcgagaggct
tttgaatgggtagttggtgagatagagtctcgcttcttgcaatcccttgtggcaccagga
gagatgattggctgtgttgctgcacagtctattggtgaacctgccacacagatgactctt
aatacatttcattatgctggtgtgagtgccaagaatgttactcttggtgtgccaaggttg
agggagatcatcaatgttgccaagaaaatcaaaacaccttctctttctgtgtacttaaaa
cctgaggtaggcaaaacaaaagagagggccaaaactgtccagtgtgcgttagaatatacc
actttgcggagtgttactcaagccacagaagtgtggtatgatcctgatcctatgagcacc
cttattgaagaggatgttgaatttgtcaagtcatactatgaaatgccagatgaagagatt
gaccctgacaaaatctctccatggttgcttcgcatagagttaaatcgtgaaatgatggtg
gataagaaacttagcatggctgacattgctgaaaagatcaaccttgaatttgatgatgac
ttaacctgtatttttaacgatgataatgcggaaaagctaatccttcgaattcgtattatg
aatgatgaagctccaaaaggtgagctggatgaatctgctgaggatgatgtattccttaag
aagatcgagagtaacatgctgacggagatggctctccggggtattccagatattaacaag
gtgtttataaagaacagtaaggtgcagaagtttgatgacaatgaaggatttaaagcagaa
aatgaatggatgttggacactgaaggtgtaaatcttttggcagttatgacacacgaagat
gtggatgcaagtagaacaacaagtaatcacttaattgaagttattgaagttcttggtatt
gaggcagttcgtagatcactgctagatgagttgagggttgtcatatcttttgatgggtcc
tatgtgaactaccgacatttggccatattgtgtgataccatgacctaccgtggtcattta
atggccattactcggcatggtatcaaccggaatgatactggtcccatgatgagatgctcg
ttcgaggagacggtggacattcttctcgacgctgctgtatttgcagagtcagatcacctg
aggggtgtaacagaaaatatcatgttaggtcagcttgcaccaattggcacaggaggctgt
tcattgtatctcaatgaggagatgttgaaacaagctattgagataccattacctagctac
atggaaggtggtcttgaatttggcatgacacctggacgttcacctatcagtggaacccca
tatcacgatggaatgatgtctccaaattatttgctcagcccaaatatgcggatgtcaccg
attacagatgctcaattttctccgtatgtgggtggcatggctttctctcccacttcatcc
cctggttacagtccatcatcccctggttacagcccatcatcccctggttacagcccgacc
tctccaggatacagtcccacttcccccggttatagccccacatctcctggttacagcccc
acttcccccacttatagccccagctcccctggctacagcccgacaagtccagcatattct
ccaaccagtccttcatactcacccacatcacccagttatagtccaacatctccaagctat
agcccaacctcgcctagctacagcccaacatcacctagctacagccctacttctccagcg
tacagccccacttctccggcctacagccctacttctccggcctacagccccacttctcca
tcttacagccccacttcgccatcttacagccccacttcaccttcttacagccccacatcg
ccttcatatagccccacctcaccctcttatagtccgacttctccatcatatagtccgact
tctcctgcttacagtcctacctcccctggttacagcccaacatctcccagctatagccca
acatcaccatcctacagtccaacatcaccaagttacaatccctcggcgagatacagcccc
tcccttgcgtattcgccaactagcccgaagctgtctccttctagtccatacagcccgtca
tctccaagttacagtcccacatcaccatcgtactctccaacatctccatcatattctcct
tcaagcccaacctatagtcccagcagcccatacaacaactcaggtacaagcccagattat
agtcccagttctccccagtacagtccaagtgcagggtactcaccaagtgctcctgggtat
tcaccatcatctactagccagtacaccccacgtgtgagtgagagagacaacagaagtgtc
aaagatgacaaggctgggtga
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integrated database retrieval system
