KEGG   Solanum lycopersicum (tomato): 778349
Entry
778349            CDS       T02665                                 
Name
(RefSeq) DNA-directed RNA polymerases IV and V subunit 2
  KO
K16252  DNA-directed RNA polymerase IV and V subunit 2 [EC:2.7.7.6]
Organism
sly  Solanum lycopersicum (tomato)
Pathway
sly03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:sly00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    778349
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:sly03021]
    778349
Enzymes [BR:sly01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     778349
Transcription machinery [BR:sly03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol IV and V specific subunits
     778349
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_1 RNA_pol_Rpb2_7 RNA_pol_Rpb2_4 RNA_pol_Rpb2_3 RNA_pol_Rpb2_2 RNA_pol_Rpb2_5
Other DBs
NCBI-GeneID: 778349
NCBI-ProteinID: XP_004236361
LinkDB
Position
3:58348014..58358714
AA seq 1217 aa
MTISDIMEEVGCSSGKEKISNGSTRMDFDIDDLFEVDDDDWDEDEDEDEDDSHDMVLIKE
LGESFLKNFCKKASTGFFEKYGLISHQINSYNDFINYGIQRVFDSVGEIHVEPGYDPSKR
GDGDWKHASVKFGKVTLERPKFWAGEKFSVDGGKEYLDLLPRHARLQNMTYSARIMVETH
VQVYTKKLVRSDKFKTGVDRFVDKECEVEDKRDVLIGRIPVMVNSELCWMNGVDKLDCEF
DHGGYFIVKGAEKTFIAQEQLCLKRLWVSNNPTWMVGYRPGEKRKRVYIKLTETLKLEHI
KGGEKALSVYILAEMPIWVLFFALGVSSDREVVNLIDVDIEDTTIVNILVASIHEADKNC
EDFRKGKKALAYVDRLIKNCKFPPQESVEECINAYLFPNLSGFKQKARFLGYMVKCLLHS
FIGRRKVDNRDDFRNKRLELAGELLERELRAHIKHAERRMVKAMQRDLYGDRQVQPIEHY
LDASIITNGLSRAFSTGHWCHPYKRMERVSGVVATLRRTNPLQMTADMRKSRQQVTYTGK
VGDARYPHPSHWGKLCFLSTPDGENCGLVKNLASMGLVSTIILKPFLETLFRCGMQKLVD
DCSTSLHGKQKVLLDGEWVGVCEDSALFVSKLRRKRRRNEVPHQVEVKRDELQGEVRIFS
DPGRILRPLLVVSNLKKIKALKGGDYGFQSLLDNGIIELIGPEEEEDCRTAWGVEYILKA
DKENPPAKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSEKHSQQAIGFSTVNPNNR
VDTNTHQLYYPQRPLFRTMLADSLGKPKCAQYQKGMLPRPEYFNGQCAIVAVNVHLGYNQ
EDSLVMNRASLERGMFRSEHVRSYKAEVDNKEAMAKKLKIEDSVNFGKTQSKIGRVDSLD
DDGFPFIGANLQSGDIIIGKFSESGADHSVKLKHTERGMVQKVLLSANDEGKNFAVVSLR
QVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEA
ALGKGIALGGGQKYATPFSTLSVDAIMEQLQGRGFTRWGNERVYNGRTGEMVHSLIFMGP
TFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHE
RLFTLSDSSQMHICGKCKNMANVIQRTVQGGKVRGPFCRFCESVEDIVKVNVPYGAKLLC
QELFSMGISLKFDTEIC
NT seq 3654 nt   +upstreamnt  +downstreamnt
atgacaatttctgacatcatggaagaagtgggatgtagtagtggtaaagagaagatatcc
aatggatcaacaaggatggattttgatattgatgatctttttgaagtagatgacgatgat
tgggacgaggacgaagatgaagatgaggatgatagccatgatatggttttaattaaagag
ttgggtgaaagtttcttgaagaacttctgtaaaaaggcatcaactggtttttttgagaag
tatggtttaatcagtcaccagattaattcatataatgacttcatcaactatggaatccaa
agggtgtttgactcggttggggagatccatgttgagccaggttatgatccatcaaagaga
ggtgatggtgattggaagcatgcttctgtgaaattcgggaaagttacccttgagaggccg
aagttttgggctggggaaaagttttctgtggatggtgggaaagagtacctggacttgttg
ccacggcatgctcgcctccagaacatgacgtattctgccaggattatggttgagacccat
gttcaggtgtataccaaaaagctagttagaagtgacaagttcaaaactggcgtagaccgg
tttgtcgacaaggagtgtgaagtggaagacaaaagggatgtcttgattgggagaatccct
gtgatggttaactcagaattgtgctggatgaatggcgttgacaagcttgactgtgaattt
gatcatgggggatacttcattgtcaaaggggctgaaaagaccttcattgcacaagagcag
ctttgtttaaaaaggctctgggtgtcaaacaatcctacttggatggttggatatcgccca
ggtgaaaaaaggaagagagtctacattaaactgactgagaccttgaagcttgagcacatt
aagggaggagaaaaagccctcagtgtatacatccttgcagaaatgccaatttgggtcttg
ttttttgctctaggtgtttcctccgacagggaggtagtaaatttaattgatgtggatatt
gaagatactactattgtcaatatactagtagcttccatccatgaggctgataagaattgt
gaggatttcaggaaggggaaaaaggctcttgcttatgttgatagacttataaagaattgt
aaatttccacctcaagaatctgttgaggagtgcataaatgcatacctgttccctaatctt
agtggtttcaagcagaaggctcgcttccttggctatatggtaaaatgcctcttgcactct
ttcattggtcgcagaaaggttgacaacagagatgattttcgaaacaagagattggagctg
gctggtgagctcctagaacgagagctcagggcacacattaaacatgctgagaggcgtatg
gtgaaggcaatgcaaagagatctttatggagatcgacaagtgcagccaattgagcattac
ttggatgcatcaataattaccaatggtctctctagggctttttccactgggcattggtgt
cacccttacaagagaatggagagggtttccggtgtagttgcaactcttagacgaacaaat
ccattgcaaatgactgctgatatgaggaaatcgcgtcagcaggttacatacactgggaag
gttggcgatgctagatacccacatccttcacactggggaaagctatgttttctatctacc
ccagatggagaaaattgtggcctggtgaaaaatttggctagtatgggtcttgtcagcaca
attattttgaaaccatttcttgagacattgttccggtgtgggatgcaaaagttagtagac
gattgttccacctcactccatggaaagcaaaaggtactacttgatggggagtgggttgga
gtatgtgaagattctgcactcttcgtttcaaagctaagacgtaagcgccgcaggaatgaa
gtgccacaccaggttgaagttaagcgagatgagctgcagggtgaagttcgcatattttct
gatcctggaagaattctgcgtcctcttcttgttgtttcaaatctaaagaaaatcaaagct
ttgaaagggggagattatggctttcaatctcttctggacaatgggattattgagcttata
ggacctgaagaagaagaagactgtcgaactgcatggggagttgagtacatcttaaaagca
gataaagagaacccacctgctaagtatactcattgtgagttggacatgtcattcctatta
ggcttgagctgtggtattatcccatttgcaaaccatgatcatgctaggagggtcctctat
caatctgagaagcactctcagcaggcaatcgggttttcaacagtgaatccaaacaataga
gttgatacaaatacccatcaactgtattatcctcagaggccacttttccggacaatgttg
gcagattcccttgggaaaccaaaatgtgctcagtaccagaaaggaatgcttcctcggcct
gaatacttcaatgggcaatgtgcaattgtcgcagtaaatgttcaccttggctataaccaa
gaagattcattggtcatgaatcgtgcttcactggagcggggaatgtttcgatctgagcat
gttaggagctataaggctgaggttgacaataaggaagcaatggctaagaagctaaagatt
gaggactctgtcaactttggaaaaacccagagtaaaattggacgagtggacagcctagat
gatgatggttttccattcattggggcaaatctccagagtggagatatcattattgggaaa
ttttctgaatcaggggctgatcacagtgtcaagctgaagcatacggaaaggggcatggtt
cagaaggttttgctctctgctaatgatgaagggaagaactttgctgttgtatctctcaga
caagttcgttctccatgtcttggagacaagttctccagcatgcatggacaaaagggtgtc
cttggatttctggaatctcaggaaaacttcccttttacaattcaggggatcgttccagat
attgttatcaatccccatgcatttccttccaggcaaacccctggtcagctgctagaagct
gctctggggaagggcattgctctaggtggtggtcaaaaatatgccactcccttctccact
ttatcagttgatgccataatggagcagcttcaggggcgaggatttacaagatggggaaat
gagagagtttacaacggtcggacaggtgaaatggttcattccctgattttcatgggccca
acattttaccaacgcctcatccatatggctgaagataaggtgaaattccgtaacactgga
cctgtccatccccttactcgccaaccagtggcagacagaaaacgctttggtggaattaag
tttggtgaaatggagcgtgactgtcttatagctcatggtgctgcagcaaatctgcatgaa
cgccttttcacactcagtgactcttcccagatgcacatatgtggtaagtgcaagaacatg
gcaaatgtaatccagcgaactgtgcaaggtggtaaggtaaggggtccattttgccggttc
tgtgaatcagtcgaagatattgtgaaagttaatgtgccatatggtgcaaagttgttgtgc
caggagctcttcagcatgggaatatctctcaagtttgacactgagatttgctaa

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