Streptomyces avermitilis: SAVERM_2108
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Entry
SAVERM_2108 CDS
T00126
Name
(GenBank) putative rhamnogalacturonase B precursor, secreted
KO
K18195
rhamnogalacturonan endolyase [EC:
4.2.2.23
]
Organism
sma
Streptomyces avermitilis
Brite
KEGG Orthology (KO) [BR:
sma00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
SAVERM_2108
Enzymes [BR:
sma01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.23 rhamnogalacturonan endolyase
SAVERM_2108
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Gene cluster
GFIT
Motif
Pfam:
RhgB_N
CBM-like
fn3_3
CarboxypepD_reg
DUF4397
DUF4278
EMC7_beta-sandw
Motif
Other DBs
NCBI-ProteinID:
BAC69819
UniProt:
Q82LA3
LinkDB
All DBs
Position
2570591..2572267
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AA seq
558 aa
AA seq
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MSGSPNRPVRRRTFVLGGAAAAGTAALAGPLAPPASAAGFGYTDDGSNYVVDTGANLVFK
VSKTNGDLTSLVYRGTEYQGYGGKNSHVESGLGTSAVTIAQSGSTILVSVTYGTLKHYYA
ARSGENNVYVWTNKADTSVSATRYIVRVKAGLFLNDEPDSYTYAPTTVEAADVFAKADGQ
TRSKHYSKLRVVDYDYIGWSTGAVGLWMVRSNHEKASGGPFYRSLLRHQSADGGGLYEIL
YYGENQTEAQRFGLQGPYVIAFTDGGAPSSSLYPGNLTTSWADSLGIFGYVAAGGRGKVA
GVGISGRNTAYAYTVGLANSAAQYWGSARSSDGYFSIAGVLPGTYTLTVFKGELSVHSAS
VTVTAGATTTLNTITIPSSNDPGNASAIWRIGTWDGTPSGFKNAALMTYAHPSDPRAAAW
TGNVVIGSGGETSSFPAYIWKDVNSGLLVYFKLTAAQAAAAHTLRIGVTTAYANGRPRVT
VNDWVSAIPSPPTQPSTRSLTVGSYRGNNYTFTYSVPAAAWLTDTSQYNVLKIDVVSGSG
TTAYLSAGTSIDALDLLA
NT seq
1677 nt
NT seq
+upstream
nt +downstream
nt
atgtccggttcccccaacaggccggtccgccgccgcaccttcgtactcggcggcgcggcc
gccgccggcacggcggccctcgccggaccgctcgcgccccccgcgtccgccgcgggcttc
ggctacacggacgacggctcgaactacgtcgtcgacaccggcgcgaacctcgtcttcaag
gtcagcaagaccaacggcgacctgacctcgctcgtctaccgcggcaccgagtaccagggc
tacggcggcaagaactcgcacgtcgagtccggcctcggcacctccgccgtgacgatcgcg
cagtccggttcgacgatcctggtcagcgtcacgtacgggacgctcaagcactactacgcg
gcccgcagcggcgagaacaacgtctacgtgtggaccaacaaggcggacacgtcggtcagc
gcgacccgctacatcgtgcgcgtcaaggcgggtctgttcctcaacgacgagcccgattcc
tacacgtacgcgccgaccaccgtcgaagccgcggacgtgttcgcgaaggcggacggccag
acccgttcgaagcactactcgaagctccgcgtcgtcgactacgactacatcggctggagc
accggcgccgtcggcttatggatggtgcgcagcaaccacgagaaggcctccggcggcccc
ttctaccgctccctgctgcggcaccagagcgcggacggcggcggcctgtacgagatcctc
tactacggcgagaaccagacggaggcgcagcggttcgggctccagggcccgtacgtcatc
gcgttcacggacggcggcgccccctcgtcgtcgctgtaccccggaaacctcacgacctcg
tgggcggactcgctcggcatcttcgggtacgtcgccgccgggggccgcggcaaggtcgcg
ggcgtcggcatctcgggccggaacacggcgtacgcgtacacggtcgggctcgccaactcc
gccgcccagtattggggttcggcgagatcctccgacggctacttctcgatcgcgggggtc
ctgccggggacgtacacgctgaccgtcttcaagggtgaactctccgtccacagcgcctcg
gtgacggtgaccgcgggcgccacgaccaccctcaacacgatcacgatcccctcgtcgaac
gacccgggcaacgcgagcgcgatctggcggatcggcacctgggacggcacgccgagcggg
ttcaagaacgcggcgctgatgacgtacgcgcacccctccgatccccgggccgccgcctgg
accggcaacgtggtgatcggcagcggcggcgagacctcgtccttcccggcgtacatctgg
aaggacgtcaacagcggtctgctggtgtacttcaagctgaccgccgcgcaggccgccgcc
gcgcacaccctgcggatcggtgtgacgacggcgtacgcgaacggccggccacgggtcacg
gtgaacgactgggtgtcggccatcccctcgccgcccacccagccgagcacccgttccctg
accgtcgggtcgtaccggggcaacaactacacgttcacctacagcgtcccggccgccgcc
tggctcacggacaccagtcagtacaacgtgctgaagatcgacgtggtgagcggttcggga
acgacggcctacctcagcgcggggacgtcgatcgacgcgctcgacctcctcgcctga
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