Streptomyces avermitilis: SAVERM_2515
Help
Entry
SAVERM_2515 CDS
T00126
Name
(GenBank) putative hydrolase of the metallo-beta-lactamase superfamily
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
sma
Streptomyces avermitilis
Pathway
sma03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sma00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SAVERM_2515
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sma03019
]
SAVERM_2515
Messenger RNA biogenesis [BR:
sma03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SAVERM_2515
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
BAC70226
UniProt:
Q82K88
LinkDB
All DBs
Position
complement(3079351..3081036)
Genome browser
AA seq
561 aa
AA seq
DB search
MSHPHPELGPPPKLPKGGLRVTPLGGLGEIGRNMTVFEYGGRLLIVDCGVLFPEEEQPGI
DLILPDFTSIRDRLDDIEGIVLTHGHEDHIGGVPFLLREKPDIPLIGSKLTLALIEAKLQ
EHRIRPYTLEVAEGNRERIGPFDCEFVAVNHSIPDALAVAIRTPAGMVVHTGDFKMDQLP
LDNRLTDLHAFARLSEEGIDLLLSDSTNAEVPGFVPPERDISNVLRNVFAGARKRIIVAS
FASHVHRIQQILDAAHEYGRRVAFVGRSMVRNMGIARDLGYLKVPPGLVVDVKTLDDLPE
HEIVLVCTGSQGEPMAALSRMANRDHQIRIVQGDTVILASSLIPGNENAVYRVINGLTRW
GAHVVHKGNAKVHVSGHASAGELLYFYNICKPRNLMPVHGEWRHLRANAELGALTGVPHD
RIVIAEDGVVVDLVEGKAKITGKVQAGYVYVDGLSVGDVGEPALKDRKILGDEGIISVFL
VVDASTGKITGGPHIQARGSGIDDSAFGDVIPKIAEVLERSAQDGVMEPHQLQQLIRRTL
GKWVSDTYRRRPMILPVVVEV
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
ttgagtcatccgcatcctgaactcggcccgccgccgaagctccccaagggcggccttcgg
gtcaccccgctgggcggtctcggcgaaatcggccgcaacatgaccgtcttcgagtacggc
ggtcgcctgctgatcgtcgactgcggagtgctcttccccgaggaggagcagcccggaatc
gacctgatcctgccggacttcacgtccatcagggaccgcctcgacgacatcgagggcatc
gtcctcacccatggccacgaggaccacatcggcggcgtcccgttcctcctccgggagaag
ccggacatcccgctgatcggctccaagctgaccctcgcactcatcgaggcgaagctccag
gagcaccgcatccgtccgtacacccttgaggtggcggaggggaaccgcgagcgcatcggc
ccgttcgactgcgagttcgtcgccgtcaaccactccattccggacgccttggcggtcgcc
atccgcactccggccggcatggtcgtccacacgggcgacttcaagatggaccagctcccg
ctggacaaccgtctgacggacctccacgcgttcgcgcggctgagtgaggagggcatcgac
ctcctcctctcggactcgacgaacgcggaggtcccgggtttcgtcccgcccgagcgcgac
atctcgaacgtgctgcgcaacgtcttcgcgggcgcccgcaagcggatcatcgtggcgagc
ttcgccagccacgtccaccgcatccagcagatcctggacgcggcgcacgagtacggccgc
cgggtcgccttcgtcggacgctcgatggtccgcaacatgggcatcgcccgggacctgggc
tatctgaaggttccgccgggcctggtcgtggacgtcaagacgctggacgacctcccggag
cacgagatcgtgctggtctgcacgggctcgcagggcgagccgatggcggctctgtcacgc
atggccaaccgggaccatcagatccgcatcgtccagggcgacacggtcatcctcgcgtcg
tcgctcatccccggtaacgagaacgcggtctaccgcgtgatcaacggcctgacccgctgg
ggcgcgcacgtcgtccacaagggcaacgccaaggtgcacgtctcgggccacgcctcggcc
ggcgagctgttgtacttctacaacatctgcaagccacgcaacctcatgccggtccacggc
gaatggcgccatctgcgggccaacgccgagctgggcgctctcaccggcgtcccgcacgac
cgcatcgtgatcgccgaggacggcgtcgtcgtcgacctggtcgagggcaaggccaagatc
accggcaaggtccaggcgggatacgtgtacgtcgacggcctctcggtcggcgacgtcggc
gagcccgcgctcaaggaccgcaagatcctcggcgacgaggggatcatctcggtcttcctg
gtcgtggacgcgtccaccggaaagatcactggtggtccccacatccaggcccgtggctcc
ggcatcgacgactccgcgttcggcgacgtcatcccgaagatcgccgaagtgctggagagg
tccgctcaggacggggtcatggagccccaccagctgcagcaactcatccgccgcacactg
ggcaagtgggtctcggacacctaccggcgccggccgatgatcctgccggtcgtggtcgag
gtctga
DBGET
integrated database retrieval system
