Streptomyces avermitilis: SAVERM_4851
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Entry
SAVERM_4851 CDS
T00126
Symbol
recQ
Name
(GenBank) putative ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
sma
Streptomyces avermitilis
Pathway
sma03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sma00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SAVERM_4851 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sma03019
]
SAVERM_4851 (recQ)
03400 DNA repair and recombination proteins [BR:
sma03400
]
SAVERM_4851 (recQ)
Enzymes [BR:
sma01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SAVERM_4851 (recQ)
Messenger RNA biogenesis [BR:
sma03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SAVERM_4851 (recQ)
DNA repair and recombination proteins [BR:
sma03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
SAVERM_4851 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
Helicase_C
RecQ_Zn_bind
TamB
Motif
Other DBs
NCBI-ProteinID:
BAC72563
UniProt:
Q82DW7
LinkDB
All DBs
Position
5896755..5898731
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AA seq
658 aa
AA seq
DB search
MSTAEALDESEALTTLHRVFGYEAFRGEQEAVIEHVVAGGDAVVLMPTGGGKSLCYQIPA
LVRPGTGVVVSPLIALMQDQVDALRALGVRAGFINSTQDFDERRTMEAAFLAGELDLLYL
APERLRLEGTLDLLSRGKISVFAIDEAHCVSQWGHDFRPDYLALSLLGERWPDVPRLALT
ATATHATHQEITQRLGMPTARHFVASFDRPNIQYRIVPKADPKKQLLSFLSDEHAGDAGI
VYCLSRNSVEKTAEFLSRNGIEAVPYHAGLDAGTRAAHQSRFLREEGLVVVATIAFGMGI
DKPDVRFVAHLDLPKSVEGYYQETGRAGRDGLPSTAWMAYGLNDVIQQRKLIQGGEGDEA
FRRRAAAHLDAMLGLCETAQCRRGQLLAYFGQDPQSGGCGNCDTCLVPPDTWDGTIAAQK
VLSTVWRLERERRQKFGAVQIIDILLGRRTAKVIQFDHDQLSVFGIGEELTEGEWRGVVR
QILAQGLLAVEGEYGTLVLTEASGTVLRREREVPLRKDPPKPTASRSSAGSGAGSAKGER
KPKAAVAELSPELQPAFEALRAWRAEQAREQGVPAYVIFHDATLREIVTAWPSSVAELGT
ISGVGEKKLATYGEGVLGALAALGGTPGDDTQKSPTAEAEPAPDWPEMDEEPEPEEWM
NT seq
1977 nt
NT seq
+upstream
nt +downstream
nt
atgagcacggcggaggcactggacgagagcgaggcgctgaccacgcttcaccgcgtcttc
gggtacgaggccttccgcggtgagcaggaagcggtcatcgagcacgtggtggccggcggc
gacgcggtcgtcctcatgccgaccggcggcggcaagtcgctgtgctaccagatcccggcc
ctggtcagacccggtacgggggtggtcgtctcgcccctcatcgcgctgatgcaggaccag
gtggacgcgctgcgggcgctgggcgtgcgcgccgggttcatcaactcgacgcaggacttc
gacgagcggcgcacgatggaggccgcgttcctggccggggagctggacctgctctacctg
gctccggagcgcctgcggctggaagggaccctcgatctgctctcacgcggcaagatctcg
gtcttcgccatcgacgaggcgcactgtgtgtcgcagtggggtcacgacttccgccccgac
tatctggcgctgtcgctgctgggcgagcggtggccggacgtgccgcggctcgcgctcacg
gcgacggccacgcacgcgacgcaccaggagatcacccagcgcctgggcatgccgaccgcc
cggcacttcgtggcgagcttcgaccgccccaacatccagtaccggatcgtgcccaaggcc
gaccccaagaagcagctgctgtccttcctgagcgacgagcacgcgggcgacgcgggcatc
gtctactgcctctcgcggaactcggtggagaagacggccgagttcctctcccgcaacggt
atcgaggcggtgccgtaccacgcgggcctggacgcgggcacccgtgcggcccaccagtcc
cgcttcctgcgtgaggaaggcctcgtcgtggtcgcgacgatcgccttcggcatgggcatc
gacaagccggacgtgcggttcgtcgcccacctcgacctgccgaagtccgtcgagggctac
taccaggagacaggccgtgcgggccgcgacggactgccgtccacggcctggatggcctac
gggctgaacgacgtcatacaacagcggaagctgatccagggcggcgagggcgacgaggcg
ttccggcgccgggccgccgcccacctggacgcgatgctggggctgtgcgagacggcacag
tgccgccgcggccagctgctcgcctacttcggccaggacccgcagtccggcggctgcggc
aactgcgacacatgcctcgtgccgcccgacacctgggacggcacgatcgcggcgcagaag
gtgctgtccacggtgtggcgcctggagcgggagcgacgccagaagttcggtgcggtgcag
atcatcgacatcctgctggggcggcgcacggcgaaggtgatccagttcgaccacgaccag
ctgtccgtgttcggcatcggcgaggagctgaccgaaggagaatggcgcggagtcgtacgg
cagatactggcgcaggggctgctcgcggtcgagggcgagtacgggacgctggtgctgacg
gaggcgagcgggacggtgctgcggcgcgagcgggaggtgccgctgcgcaaggatccgccg
aagccgacggcatcccggtcctcggcgggctccggcgcgggctccgccaagggcgagcgc
aagccgaaggcggccgtggccgagctctcgccggaacttcagccggccttcgaggccctg
cgcgcctggcgcgccgagcaggcgcgcgagcagggcgtcccggcgtacgtcatcttccac
gacgccacgctccgggagatcgtcacggcgtggccgtcctcggtggcggagctgggcacc
atcagcggggtgggcgagaagaagctggcgacgtacggggagggcgtgctgggggcactc
gccgcgctgggcgggacacccggtgatgacacccagaagtccccgacggccgaagccgag
ccggctccggactggcccgagatggacgaggaaccggagccggaggagtggatgtag
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