Streptomyces avermitilis: SAVERM_5260
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Entry
SAVERM_5260 CDS
T00126
Symbol
orn
Name
(GenBank) putative 3'->5' exoribonuclease
KO
K13288
oligoribonuclease [EC:3.1.-.-]
Organism
sma
Streptomyces avermitilis
Pathway
sma03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
sma00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
SAVERM_5260 (orn)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sma03019
]
SAVERM_5260 (orn)
03009 Ribosome biogenesis [BR:
sma03009
]
SAVERM_5260 (orn)
Messenger RNA biogenesis [BR:
sma03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SAVERM_5260 (orn)
Ribosome biogenesis [BR:
sma03009
]
Eukaryotic type
Pre-60S particles
RNases
SAVERM_5260 (orn)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
Motif
Other DBs
NCBI-ProteinID:
BAC72972
UniProt:
Q82CS8
LinkDB
All DBs
Position
complement(6372895..6373497)
Genome browser
AA seq
200 aa
AA seq
DB search
MNDRMVWIDCEMTGLSLSDDALIEVAALVTDSELNVLGEGVDIVIRPPDAALETMPEVVR
TMHTASGLLDELAAGTTLADAEAQVLAYVREHVKEPGKAPLCGNSVGTDRGFLARDMSAL
ETYLHYRIVDVSSVKELARRWYPRAYFNSPEKSGNHRALADIRESIAELRYYREAIFVPQ
PGPDSETARTIAAKHVLPAQ
NT seq
603 nt
NT seq
+upstream
nt +downstream
nt
atgaacgatcgcatggtgtggatcgactgcgagatgaccggtctctcgctgtccgacgac
gcgctcatcgaggtggccgcactggtcaccgactccgagctgaacgtactgggcgagggg
gtggacatcgtgatccgcccgccggacgccgcgctggagacgatgccggaggtggtgcgc
accatgcacaccgcctcgggcctgctcgacgagctggcggccggcacgacgctggcggac
gccgaggcgcaggtgctcgcgtatgtacgggagcacgtcaaggaacccggcaaggctccg
ctgtgcggaaactcggtcggcaccgaccgcggcttcctcgcccgcgacatgtcggcgctg
gagacctacctccactaccggatcgtggacgtcagctcggtgaaggagctggcccgccgc
tggtacccgagggcgtacttcaacagccccgagaagagcggcaaccaccgcgcgctggcg
gacatccgcgagtcgatcgcggagctgcgctactaccgcgaggccatcttcgtaccgcag
ccgggccccgactcggagacggcccgcacgatcgccgcgaagcacgtgctgcccgcgcag
tag
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integrated database retrieval system
