Streptomyces avermitilis: SAVERM_5329
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Entry
SAVERM_5329 CDS
T00126
Symbol
recD
Name
(GenBank) putative exodeoxyribonuclease V
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
sma
Streptomyces avermitilis
Pathway
sma03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sma00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
SAVERM_5329 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sma03400
]
SAVERM_5329 (recD)
Enzymes [BR:
sma01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
SAVERM_5329 (recD)
DNA repair and recombination proteins [BR:
sma03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
SAVERM_5329 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
HHH_RecD2
OB_YrrC
UvrD_C_2
SH3_13
Viral_helicase1
HHH_5
AAA_11
AAA_22
Helicase_RecD
PIF1
NPHP3_N
AAA_16
PhoH
nSTAND3
TraI_hel_assoc_N
DEAD
HTH_IclR
UvrD_C
AAA
TrwB_AAD_bind
UvrD-helicase
ABC_tran
ATPase_2
DUF87
Motif
Other DBs
NCBI-ProteinID:
BAC73041
UniProt:
Q82CL6
LinkDB
All DBs
Position
6456160..6458436
Genome browser
AA seq
758 aa
AA seq
DB search
MASGASRAAQPGTGERHLAVLEGVLERITYANEENGYTVARVDTGRGAGDLLTVVGSLLG
AQVGESLRMEGRWGSHPQYGKQFTVENYTTVLPATVQGIRRYLGSGLVKGIGPVFADRIT
QHFGLDTLQIIEEEPKRLIEVPGLGPKRTKKITEAWEEQKAIKEVMLFLQTVEVSTSIAV
RIYKKYGDASISVVKNQPYRLATDVWGIGFLTADKIAQSVGIPHDSPERVKAGLQYALSQ
STDQGHCYLPEEQLIADAVKLLQVDTGLVIECLAELAAPSEEDGEPGVVRERLPGPDGGD
PVTAIYLVPFHRAELSLSAQLLRLLRTDQDRMPGFHDVAWDKALDWLKGRTGAELAPEQE
EAVRLALTQKVAVLTGGPGCGKSFTVRSIIELARAKRAKVVLAAPTGRAAKRLAELTGAE
ASTVHRLLELKPGGDAAYDKDRPLDADLVVVDEASMLDLLLANKLVKAVPPGAHLLFVGD
VDQLPSVGAGEVLRDLLADGGPIPAVRLTRVFRQAQQSGVVTNAHRINSGRHPLTDGMKD
FFLFVEDDTEEAGRLTVDVAARRIPAKFGLDPRRDVQVLAPMHRGPAGAGTLNGLLQQAV
TPARPDLPEKRFGGRVFRVGDKVTQIRNNYEKGENGVFNGTVGVVTSLDLDEQRLTVLTD
EDEEVAYEFDELDELAHAYAVTIHRSQGSEYPAVVIPVTTGAWMMLQRNLLYTAVTRAKK
LVVLVGSRKAIGQAVRTVSAGRRCTALDFRLSPRPLAP
NT seq
2277 nt
NT seq
+upstream
nt +downstream
nt
atggccagtggggcgagtcgggcggcacagccaggtaccggagagcggcacctggccgtg
ctcgaaggcgtactggagcggatcacgtacgccaacgaggagaacggatacacggtcgcg
cgcgtggacaccggccgtggcgccggcgatctgctgaccgtcgtcggctcgctgctcggc
gcccaggtgggggagtcgctgaggatggagggccgttggggttcccatccccagtacggc
aagcagttcaccgtcgagaactacacgaccgtgctcccggccaccgtccagggcatccgc
cgctatctcggctccggcctcgtcaagggcatcggccccgtcttcgccgaccgcatcacc
cagcacttcggcctcgacaccctccagatcatcgaggaggagcccaagcggctgatcgag
gttcccgggctcggacccaagcggacgaagaagatcaccgaggcctgggaggagcagaag
gcgatcaaggaggtcatgctcttcctccagaccgtcgaggtgtcgacgtccatcgcggtc
cgcatctacaagaagtacggcgacgcctccatctccgtcgtcaagaaccagccctaccgc
ctcgccaccgacgtctggggcatcggcttcctcaccgccgacaagatcgcccagtccgtc
ggcatcccgcacgacagcccggagcgcgtcaaggccggtctccagtacgccctttcgcag
tccaccgaccagggccactgctacctccccgaggagcagctgatcgccgacgcggtgaag
ctgctccaggtggacacggggctggtcatcgagtgcctcgcggagctggcggcgccgagc
gaggaggacggcgagcccggcgtcgtacgggagcggctgcccggccccgacggaggggac
ccggtgacggccatctacctcgtccccttccaccgcgccgaactctccctctccgcccag
ctgttgcgcctcctgcgcaccgaccaggaccggatgcccggcttccacgacgtcgcctgg
gacaaggcgctcgactggctcaaggggcgtacgggggcggagctggcccccgagcaggag
gaggccgtccggctcgcgctcacccagaaggtcgcggtcctgaccggaggccccggctgc
ggcaagtcgttcacggtccgttcgatcatcgagctggcccgcgccaagcgggccaaggtc
gtgctcgccgcccccaccggccgcgccgccaaacgcctcgccgagctgaccggcgccgag
gcctccaccgtgcaccggctcctggagctgaagcccggcggcgacgcggcgtacgacaag
gaccgcccgctggacgccgacctggtggtcgtggacgaggcctccatgctcgacctcctc
ctcgccaacaagctggtcaaggcggtcccgccgggcgcccacctcctcttcgtcggcgat
gtcgaccagctgcccagcgtcggcgcgggcgaagtgctccgggacctcctcgcggacggc
ggccccatccccgccgtccgcctcacccgcgtcttccgccaggcccagcagtccggagtc
gtcaccaacgcgcaccgcatcaactccggccggcacccgctcaccgacgggatgaaggac
ttcttcctcttcgtcgaggacgacaccgaggaggccggccggctcacggtggacgtcgcg
gcccgtcgcattcccgccaagttcggcctcgatccgcggcgggacgtccaggtgctcgcc
cccatgcaccggggccccgccggcgcgggcacgctcaacggcctgctccagcaggcggtc
acccccgcccgcccggacctgcccgagaagcggttcggcggccgcgtcttccgcgtcggc
gacaaggtcacccagatccgcaacaattacgagaagggcgaaaacggtgtcttcaacggc
accgtgggcgttgtcacctccctcgacctggatgaacagcgcctgacggtgctgaccgac
gaggacgaggaggtggcgtacgagttcgacgaactcgacgagctggcgcacgcctacgcg
gtgaccatccaccgctcgcagggcagcgagtacccggccgtggtgatcccggtcaccacc
ggcgcctggatgatgctccagcgcaatctgctctacacagcggtgacccgcgccaagaag
ctggtcgtcctcgtcggttcgcgcaaggcgataggccaggcggtgcgcacggtatcggcc
ggacggcgttgcacggccctggacttcaggctttccccgcggcctctcgccccctga
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integrated database retrieval system
