Streptomyces avermitilis: SAVERM_5679
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Entry
SAVERM_5679 CDS
T00126
Symbol
sig47
Name
(GenBank) putative RNA polymerase sigma factor
KO
K03086
RNA polymerase primary sigma factor
Organism
sma
Streptomyces avermitilis
Pathway
sma02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
sma00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
SAVERM_5679 (sig47)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sma03021
]
SAVERM_5679 (sig47)
Transcription machinery [BR:
sma03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
SAVERM_5679 (sig47)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
HTH_28
PolyA_pol_arg_C
Motif
Other DBs
NCBI-ProteinID:
BAC73391
NITE:
SAV5679
UniProt:
Q82BM5
LinkDB
All DBs
Position
6868347..6869516
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AA seq
389 aa
AA seq
DB search
MQTQTLAQTDISAENAEPDAETDVIAAVPAQSRAAHHPETETEPTAPPEPDEPPAGAVES
VDVVETVELVEAPEPPAPRARSNDTGGPSSDLFRQYLREIGRIPLLTAAEEVELARRVEA
GLFAEEKLSSTPDLDSQLGLDLDKLVVMGRMAKRRLIEANLRLVVSVAKRYVGRGLTMLD
LVQEGNLGLIRAVEKFDYARGYKFSTYATWWIRQAMSRALADQARTIRVPVHVVELINRV
VRVQRRMLQERGYEPTPEEVAAHLDLPGERVSEVLRLAQEPVSLHAPVGEEDDVALGDLI
EDGDATSPVESAAFLLLREHLDAVLSTLGERERKVVQLRYGLADGRPRTLEEIGRIFGVT
RERIRQIESKTLNKLRDHAFADQLRGYLD
NT seq
1170 nt
NT seq
+upstream
nt +downstream
nt
gtgcagacccagaccctcgcccagaccgacatcagtgccgaaaacgcggagccggacgcg
gagaccgacgtcatcgcggcggtacccgcgcagagccgggccgcgcaccaccccgagacg
gagacggagcccacggccccgcccgagccggacgagccgccggccggcgcggtggagagc
gtcgacgtcgtggagacggtcgagctcgtcgaggcaccggagccgcccgcgccgcgcgcc
cgcagcaacgacaccggtggcccttcctccgacctgttccgccagtacctgcgcgagatc
ggccgcatcccgctgctcacggccgccgaggaggtcgagctcgcccgccgcgtcgaggcc
ggcctgttcgccgaggagaagctgagcagcacccccgatctcgactcccaactcggcctg
gatctcgacaagctggtcgtcatgggccggatggccaagcgccgtctgatcgaggccaac
ctgcggctcgtcgtctccgtcgccaagcggtacgtgggccgcggcctgaccatgctcgac
ctcgtccaggagggaaacctgggcctgatcagggcagtcgagaagttcgactacgcgcgc
ggctacaagttctcgacgtacgcgacctggtggatccgccaggccatgtcccgcgccctc
gccgaccaggcccgcaccatccgggtccccgtccatgtcgtcgagctgatcaaccgcgtg
gtccgcgtccagcgccgcatgctccaggaacggggctacgagccgaccccggaagaggtc
gccgcccacctcgacctgccgggcgaacgcgtcagcgaggtactgcgcctcgcccaggaa
ccggtgtcgttgcacgccccggtgggcgaggaggacgacgtggccctcggcgacctgatc
gaggacggcgatgccacgtcacccgtggagtcggccgcgttcctgctgctcagggagcat
ctggacgcggtcctgtcgacgctcggcgagcgggagcggaaggtcgtccagctccgctac
gggctggccgacggccgcccccgcacactggaggagatcgggcgcatcttcggcgtcacg
cgtgaacgcatccgccagatcgagtcgaagaccctgaacaaactccgcgaccacgcgttc
gcggaccagctgcggggctacctggactga
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