Streptomyces avermitilis: SAVERM_6143
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Entry
SAVERM_6143 CDS
T00126
Symbol
dnaE1
Name
(GenBank) putative DNA polymerase III alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
sma
Streptomyces avermitilis
Pathway
sma03030
DNA replication
sma03430
Mismatch repair
sma03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sma00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SAVERM_6143 (dnaE1)
03430 Mismatch repair
SAVERM_6143 (dnaE1)
03440 Homologous recombination
SAVERM_6143 (dnaE1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sma03032
]
SAVERM_6143 (dnaE1)
03400 DNA repair and recombination proteins [BR:
sma03400
]
SAVERM_6143 (dnaE1)
Enzymes [BR:
sma01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
SAVERM_6143 (dnaE1)
DNA replication proteins [BR:
sma03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
SAVERM_6143 (dnaE1)
DNA repair and recombination proteins [BR:
sma03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
SAVERM_6143 (dnaE1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
BAC73854
UniProt:
Q82AB6
LinkDB
All DBs
Position
7388156..7391695
Genome browser
AA seq
1179 aa
AA seq
DB search
MSKPPFTHLHVHTQYSLLDGAARLKDMFNACNEMGMTHIAMSDHGNLHGAYDFFHTAKKA
GVTPIIGIEAYVAPESRRNKRKIQWGQPHQKRDDVSGSGGYTHKTIWAANRTGLHNLFKL
SSDAYAEGWLQKWPRMDKETISQWSEGLIASTGCPSGELQTRLRLGQFDEALKSAAEYQE
IFGKDRYFLELMDHGIEIERRVRDGLLEIGKKLGIPPLVTNDSHYTYANEATAHDALLCI
QTGKNLSDPDRFRFDGTGYYLKSTDEMYAIDSSDAWQEGCANTLLVAEQIDTSGMFEAKN
LMPKFDIPEGFTEVTWFQEEVRRGMERRFPGGVPDDRQKQAEYEMDVIIQMGFPGYFLVV
ADFIMWAKKQGIAVGPGRGSAAGSIVAYAMGITDLDPIPHGLIFERFLNPERVSMPDVDI
DFDERRRVEVIRYVTEKYGADKVAMIGTYGKIKAKNAIKDSARVLGYPYAMGDRLTKAMP
ADVLGKGIDLNGITDPSHPRYSEAGEIRAMYENEPDVKKVIDTAKGVEGLVRQMGVHAAG
VIMSSEPIVDHAPIWVRHTDGVTITQWDYPQCESLGLLKMDFLGLRNLTIMDDAVKMVKS
NKGIDLDLLSLPLDDPKTFELLQRGETLGVFQFDGGPMRSLLRLMKPDNFEDISAVSALY
RPGPMGMDSHTNYALRKNGLQEITPIHKELEEPLQEVLAVTYGLIVYQEQVQKAAQIIAG
YSLGEADILRRVMGKKKPDELAKNFVLFQEGAQKKGYSDEAIQALWDVLVPFAGYAFNKA
HSAAYGLVSYWTAYLKANYPAEYMAGLLTSVKDDKDKSAVYLNECRRMGIKVLPPDVNES
MSNFAAQGDDVILFGLSAVRNVGTNVVESIIKSRKAKGKYASFPDYLDKVEAVACNKRTT
ESLIKAGAFDTMGHTRKGLTAQFEPMIDNVVQVKRKEAEGQFDLFGGMGEEESDEPGFGL
DVVFTDDEWEKTYLLAQEREMLGLYVSDHPLFGLEHVLSDKADAGIAQLTGGEHADGAVV
TIGGIISGLQRKMTKQGNAWAIATVEDLAGSLECMFFPATYQLVSTQLVEDAVVFVKGRL
DKREDVPRLVAMELQVPDLSNAGTNAPVILTIPALKVTPPMVSRLGEILSHHKGESEVRI
RLQGPRKTTVLRLDRHRVKPDPALFGDLKVLLGPSCLAG
NT seq
3540 nt
NT seq
+upstream
nt +downstream
nt
gtgtcaaagccgccgttcacgcacctgcacgtccacacccagtactcgctgctggacggt
gccgcgcggctcaaggacatgttcaatgcctgcaatgagatgggcatgacacacatcgcc
atgagcgaccacggcaacctccacggggcgtacgacttcttccacacggccaagaaggcg
ggcgtcacgccgatcatcggcatcgaggcgtacgtcgcccccgagtcccggcgcaacaag
cgcaagatccagtggggccagccgcaccagaagcgcgacgacgtgtccggttcgggtggt
tacacgcacaagacgatctgggcggcgaaccggacgggcctgcacaacctcttcaagctc
tcctcggacgcgtacgccgagggctggctccagaagtggccccggatggacaaggagacc
atctcccagtggtccgaaggtctcatcgcctccaccggctgcccctccggcgagctccag
acccggctgcgcctgggccagttcgacgaggccctgaagtcggccgccgagtaccaggag
atcttcggcaaggaccggtacttcctggagctgatggaccacggcatcgagatcgagcgc
cgggtccgtgacggtctcctggagatcggcaagaagctcggcatcccgcccctggtgacg
aacgactcgcactacacctacgcgaacgaggcgaccgcgcacgacgccctgctgtgcatc
cagaccggcaagaacctctccgacccggaccgcttccgcttcgacggcacgggctactac
ctgaagtccacggacgagatgtacgccatcgactcctcggacgcctggcaggagggctgc
gccaacacgctcctggtcgccgagcagatcgacacctccggcatgttcgaggcgaagaac
ctcatgccgaagttcgacatccccgagggcttcaccgaggtcacctggttccaggaggag
gtgcgccgcggcatggagcgccgcttccccggcggcgtccccgacgaccgtcagaagcag
gccgagtacgagatggacgtcatcatccagatggggttcccggggtacttcctcgtggtc
gccgacttcatcatgtgggccaagaagcagggcatcgcggtgggcccgggccgtggttcg
gcggccggctcgatcgtcgcgtacgccatgggcatcaccgacctcgacccgatcccgcac
ggtctgatcttcgagcggttcctcaaccccgagcgcgtctccatgcccgacgtcgacatc
gacttcgacgagcgtcggcgcgtcgaggtgatcaggtacgtgaccgagaagtacggcgcc
gacaaggtcgccatgatcggcacgtacggcaagatcaaggcgaagaacgccatcaaggac
tccgcgcgcgtgctgggctacccgtacgcgatgggcgaccgcctcaccaaggcgatgccc
gccgacgtcctcggcaagggcatcgacctcaacggcatcaccgacccctcgcacccccgc
tacagcgaggccggcgagatccgggcgatgtacgagaacgagccggacgtgaagaaggtc
atcgacaccgccaagggcgtcgagggcctggtccggcagatgggcgtgcacgccgccggc
gtcatcatgtccagcgagcccatcgtcgaccacgcccccatctgggtgcggcacacggac
ggcgtgaccatcacgcagtgggactacccgcagtgcgagtcgctcggcctgctgaagatg
gacttcctcggcctgcgcaacctgacgatcatggacgacgccgtcaagatggtgaagtcc
aacaagggcatcgacctcgacctgctgagcctcccgctcgacgacccgaagaccttcgaa
ctgctccagcgcggcgagaccctcggcgtcttccagttcgacggcggccccatgcgctcg
ctgctgcgcctgatgaagcccgacaacttcgaagacatctccgccgtctcggcgctctac
cgtcccggcccgatgggcatggactcgcacacgaactacgcgctccgcaagaacggcctt
caggagatcacgccgatccacaaggagctggaggagcccctccaggaggtcctggccgtc
acctacggcctgatcgtctaccaggagcaggtgcagaaggccgcccagatcatcgccggg
tactcgctcggcgaggccgacatcctgcgccgcgtgatgggcaagaagaagcccgacgag
ctggcgaagaacttcgtcctcttccaggagggcgcccagaagaagggctacagcgacgag
gccatccaggccctgtgggacgtcctggtgcccttcgccggatacgcgttcaacaaggcg
cactcggccgcgtacggcctggtctcgtactggaccgcgtatctgaaggcgaactacccg
gccgagtacatggccggcctgctcacctcggtcaaggacgacaaggacaagtcggccgtc
tatctgaacgagtgccggcgcatgggcatcaaggtgctcccgccggacgtcaacgagtcg
atgtcgaacttcgccgcgcagggcgacgacgtgatcctcttcggcctgtccgccgtccgt
aacgtcggtacgaacgtcgtcgagtcgatcatcaagagccgcaaggccaagggcaagtac
gcctccttccccgactatctcgacaaggtcgaggcggtcgcctgcaacaagcgcaccacc
gaatcgctgatcaaggcgggcgcgttcgacacgatggggcacacccgcaagggcctcacc
gcgcagttcgagccgatgatcgacaacgtggtgcaggtcaagcgcaaggaggccgagggc
cagttcgacctcttcggcggcatgggcgaggaggagagcgacgagcccggcttcggactc
gacgtcgtcttcaccgacgacgagtgggagaagacctatctgctcgcccaggagcgggag
atgctcggtctgtacgtctccgaccacccgctcttcggcttggagcacgtgctgtccgac
aaggccgacgcgggcatcgcccagctcaccggaggcgagcacgcggacggcgcggtcgtc
accatcggcggcatcatctcgggcctccagcgcaagatgaccaagcagggcaacgcgtgg
gcaatcgccaccgtggaggacctggcgggctccctggagtgcatgttcttcccggccacg
taccagctggtgtcgacccaactcgtcgaggacgcggtcgtgttcgtcaagggacgcctc
gacaagcgcgaggacgtgccccggctcgtcgccatggagctccaggtccccgacctgtcg
aacgcgggcaccaacgcgcccgtgatcctcaccattccggcgctgaaggtcaccccgccg
atggtgagccggctcggtgagatcctcagccaccacaagggcgagagcgaggtgcggatc
agactccagggtccgcgcaagacgaccgtgctgcggctcgaccggcaccgggtgaagccg
gatccggccctgttcggcgatctgaaggtgctgctcggcccgtcctgcctggcgggctga
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integrated database retrieval system
