Salinimonas marina: IT774_01330
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Entry
IT774_01330 CDS
T07441
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
smaa
Salinimonas marina
Pathway
smaa03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
smaa00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
IT774_01330 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
smaa03021
]
IT774_01330 (rpoC)
03400 DNA repair and recombination proteins [BR:
smaa03400
]
IT774_01330 (rpoC)
Enzymes [BR:
smaa01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
IT774_01330 (rpoC)
Transcription machinery [BR:
smaa03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
IT774_01330 (rpoC)
DNA repair and recombination proteins [BR:
smaa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
IT774_01330 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
Peptidase_M23
BING4CT
Motif
Other DBs
NCBI-ProteinID:
QPG05932
UniProt:
A0A7S9HDH3
LinkDB
All DBs
Position
304294..308475
Genome browser
AA seq
1393 aa
AA seq
DB search
MKDLLKFLKQQNKTEEFDNIRIGLSSPEMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTLTKVRRERMGHIELASPVAHIWFLKSL
PSRIGLMLDMTLRDIERVLYFESYVVTEPGLTTLERSQLLNEEEYLDALEENGDEFDAKM
GAEAVFDLLKVLDVDADVAAMREELPSINSETKRKKITKRLKLLESFQQSGNKPEWMIMT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIYGKLEGRGLATTIKAAKKLVEREAPEVWDVLDEVIREHP
VLLNRAPTLHRLGIQAFEPTLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTIEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYLTRDKVNGKGEGMVFTSPNEAEKAYRTD
AAELHARVKVRISEYDIAEDGTKTEKVTLTETTVGRAIFSLILPKGLPFEVINQAMGKKQ
ISRLLNTCYRTLGLKDTVIAADQIMYTGFHYAMIAGASVGIDDMVIPEAKKEIIDAAEAE
VIEIQEQFQNGLVTAGERYNKVIDIWSNANEKVAKAMMDNLKSDIVVNAKGEEEEQQSFN
SVYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVITNSDCGTFEGVKMSPLIEGGDVVEPLRERVL
GRVVAEDVIKPGTDEVLIERNVLLDEALVDLLEAHSIDQIQVRSVITCDNDFGVCANCYG
RDLARGHMVAKGESVGVIAAQSIGEPGTQLTMRTFHIGGAASRASAENSVQVKTAGSLKL
QNNKGVRNTEDKMVIVSRSTELTITDTHGREKERYKVPYGAVLSVDEGAQVNAGDIVATW
DPHSHPIIVERPSKVSFSDIDDSNTEMQQDELTGLTRVVVKDLSKVNAKEPKLILESDEI
GLQEIRLPSFTTIEASEGKVAQAGDVLARIPQESSKTRDITGGLPRVADLFEARKPKEPA
ILAEVSGMVSFGKETKGKRRLIITPKDGGDQYEEMIPKWRQLNVFEGEQVERGEVIADGP
ESPHDILRLRGISAVSNYIVNEVQEVYRLQGVKINDKHIEVVIRQMLRKCLITTPGDSQF
LEGEQVEVANVKIASRELERQGKIPAQYETQLLGITKASLSTESFISAASFQETTRVLTE
AAVQGKEDDLRGLKENVIVGRLIPAGTGFAYHERRMQKRQEVLEEMSVSAEEAEQALTEA
LNAEVSGDSSSDQ
NT seq
4182 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttattaaagtttctaaagcaacaaaacaagacagaagaattcgataatatt
cgaattggcctgtcgtcacctgaaatgatccgttcctggtcattcggtgaggttaaaaag
cctgaaactattaactatcgtacctttaagccagagcgtgatggtttgttctgtgcgcgt
atctttggtccggtaaaagactatgaatgtttgtgtggtaagtacaagcgtctgaagcat
cgtggtgttatctgcgaaaaatgtggcgtggaagttaccctgaccaaagttcgtcgtgaa
cgtatgggtcacattgaactggctagcccggttgcccacatctggttcttaaaatcattg
ccatcacgcattggtttgatgctggatatgaccttgcgtgatatcgagcgggtgctgtat
ttcgaatcttatgtggtaacagagcctggtctgaccactcttgagcgcagccagctgtta
aacgaagaagagtatcttgacgcgctggaagaaaatggcgacgaatttgatgccaaaatg
ggtgccgaagcggtctttgacctgctcaaagttctggacgtagacgcggatgttgcggcg
atgcgtgaagaattgcctagcatcaattctgaaactaagcgtaagaagatcaccaagcgt
ctgaaactgcttgagtcgttccagcaatcgggcaataagcctgagtggatgatcatgacc
gtgctgccggtattaccgccagacttacgtccgctggtaccactggatggcggccgtttt
gccacctccgatttgaacgacctgtatcgccgtgttatcaaccgtaacaaccgtctgaag
cggctgttggatctggctgcgccggatatcatcgtacgcaacgaaaagcggatgctacag
gaagcggtagatgcgctgctggataacggccgtcgtggtcgggccatcactggttcgaac
aagcgtccgttgaaatctttggccgacatgatcaaaggtaaacaaggtcgtttccgtcag
aacctgctgggtaagcgggttgactattcaggtcgttcggttatcaccgttggtcctacc
ttgcgcctgcatcagtgtggtctgcccaagaaaatggcccttgagctgttcaagccgttt
atctatggcaaattagaaggtcgtggtttggccaccaccattaaagccgctaaaaagctg
gtagagcgtgaagcgccggaagtatgggatgtactggatgaagttatccgtgagcacccg
gtactgctaaaccgtgcaccaacgctacacagactcggtatccaggcctttgagccaacc
ctgattgaaggtaaagcgattcagttgcatccattggtttgtgcggcctataacgccgac
ttcgatggtgaccaaatggcggtacacgtaccactgaccattgaagcgcagcttgaagct
cgtgccctgatgatgtcgactaacaacattctgtcgcctgccaatggtgagccaatcatc
gtaccttcacaggacgtggtattaggtttgtactatttaacccgtgacaaggttaatggc
aagggcgaaggcatggtcttcaccagcccgaacgaagcagaaaaagcgtatcgtaccgat
gctgctgagttgcacgcccgggtaaaagtacgtatttctgaatatgatattgctgaagat
ggcactaaaaccgaaaaagtgacgctgaccgaaaccacagtaggtcgggctattttctca
ctgattctgccaaaaggtctgccgtttgaagttatcaaccaggcgatgggcaaaaagcaa
atctcacgtttgctgaatacctgctaccgtacactgggtctgaaagacaccgtaattgct
gctgaccaaatcatgtataccggtttccattatgcaatgattgccggtgcgtcagtgggt
atcgatgacatggttattccggaagcgaagaaagaaatcatcgacgctgccgaagccgaa
gttatcgaaatccaggaacagttccaaaacggtctggttactgccggtgagcgttacaac
aaagttatcgatatctggtcaaatgccaacgagaaagttgccaaggccatgatggataac
ctgaaatcagacatcgtggttaacgccaagggcgaagaagaagagcagcaatcatttaac
tctgtttatatgatggccgactccggcgcccggggtagtgcggctcagattcgtcagctg
gcgggtatgcgtggtctgatggcgaaaccagatggttcaatcatcgaaacgccaatcacg
gctaacttccgtgaaggtctgaacgtactgcagtacttcatctcaacccacggtgcacgt
aaaggtctggccgatacggcactgaaaaccgcgaactcaggttatctgacccgtcgtctg
gttgatgtggcacaggatttggttattaccaacagtgactgtggcacctttgaaggggtg
aaaatgtcgccgctgattgaaggtggtgatgtggtagagccgttgcgtgaacgggtactg
ggccgggttgtggcagaagatgtcattaaaccaggtaccgatgaagtacttatcgagcgt
aatgtgctgctagatgaagcattagttgatttgcttgaagcacattcaattgatcagatt
caggtacgctcggttattacctgtgacaacgactttggtgtatgtgccaactgttatggt
cgtgatctggcacgcggtcacatggttgccaaaggtgagtctgtaggggttatcgccgca
cagtccatcggtgaacccggtactcagttaaccatgcgtacgttccacatcggtggtgcg
gcatctcgggcgtcagcagaaaacagcgtacaggtgaaaaccgccggttctctgaaactg
cagaacaataaaggtgtgcgtaataccgaagacaagatggttatcgtgtcacgttcaacc
gaactgacaattaccgatactcacggtcgtgagaaagagcgctacaaggtaccttatggt
gcggtgctgtcggtagatgaaggtgcacaagtaaacgctggcgacatcgttgctacctgg
gacccgcatagtcacccgattattgttgaacgtccgtcgaaagtcagtttctctgacatc
gatgactccaacacagaaatgcagcaggacgaacttacgggtctgacccgggttgtggtt
aaagacctttctaaggttaatgccaaagagcctaagctgattctggaaagtgatgaaatt
ggtctgcaggaaattcgtctgcctagctttaccaccattgaagcctctgaaggcaaagtg
gcccaggccggtgacgtactggcacggattccacaggaaagctcgaagacccgggatatt
accggtggtctgccacgggttgctgacctgtttgaagcacgtaagcctaaagagccggcg
attctggcagaagtgtcgggtatggttagctttggtaaagaaaccaaaggtaagcgtcgc
ctgatcatcacgccaaaagatggcggcgatcaatacgaagagatgattccgaaatggcgt
cagcttaacgtgtttgaaggtgaacaggttgaacgcggcgaagttattgctgatggtcct
gaatctccacatgatatcctgcgtttacgcggtatcagcgcagtgtctaactacattgtg
aacgaagttcaggaagtttaccgcttacagggtgttaagattaacgataagcacatcgag
gtggttatccgccagatgctgcgtaagtgtctgatcaccaccccgggcgacagccagttc
ttagaaggggaacaggttgaggtggcaaacgtgaagattgccagccgtgaacttgagcgt
cagggtaaaattcctgcccagtacgaaacacagcttttgggtattaccaaagcctcgctg
tcgacagaatcgtttatctctgcggcctcgttccaggagactacacgggttcttaccgaa
gcagcggtacagggtaaagaagatgatctacgcggtctgaaagagaacgttatcgtaggt
cgattgatccctgccggtactggctttgcttatcatgagcgccggatgcaaaagcgtcag
gaagttctggaagaaatgtcggtttctgcagaagaagccgaacaggctcttactgaagcg
ttgaatgctgaagttagcggtgattcatcttctgaccagtaa
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