Salinimonas marina: IT774_02675
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Entry
IT774_02675 CDS
T07441
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
smaa
Salinimonas marina
Pathway
smaa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smaa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IT774_02675
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smaa03019
]
IT774_02675
Enzymes [BR:
smaa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
IT774_02675
Messenger RNA biogenesis [BR:
smaa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
IT774_02675
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
CMS1
UvrD-helicase
HI1480
Motif
Other DBs
NCBI-ProteinID:
QPG06142
UniProt:
A0A7S9HDP2
LinkDB
All DBs
Position
618891..620201
Genome browser
AA seq
436 aa
AA seq
DB search
MSFSQLGLSAPLQQAIEKQGYSTPSPIQEQAIPAILSGQDVLAAAQTGTGKTAGFALPLL
HRLEQGKPASPNNVRALILTPTRELAAQVEQSVREYSEFMPLKTAVVFGGVGINPQMKRL
RGGVDVLIATPGRLLDLYQQNAVKFSDLEMLVLDEADRMLDMGFIHDIKRILKLLPAKRQ
TMLFSATFAGTVTELAESITRQPVKLSTAPANTTVEKIDQRLVPLDKNRKIAALISMAKQ
QSWEQALVFSRTKHGANRIAKKLEAAGIPSAAIHGNKSQGARTKALAAFKDGSVKILVAT
DIAARGLDISQLPVVVNLDLPNTAADYVHRIGRTGRAGASGQAWSLVSADEYEQLKDIET
LIQQLLPRETLKGFEPQLSLRETTLSAPKKPGKPKKPKANSAGRRDGGRGQNDSRGQNNG
PARRRQAKPHRQTEQA
NT seq
1311 nt
NT seq
+upstream
nt +downstream
nt
atgtcgttttcccagttgggtttgtctgccccgcttcaacaagctattgaaaaacagggc
tatagcacgccgtctcccattcaggagcaagccattcctgccattctttcaggacaggat
gtactggcagctgcacagaccggaactggcaaaactgcaggatttgccttgcctcttttg
catcgtctggagcaaggcaaaccagcctcacccaacaatgtacgggcgcttattctgacc
ccgacccgcgagcttgcggctcaggtagaacagagtgttcgcgagtacagcgaatttatg
ccacttaaaaccgctgtcgtgtttggcggggttggtattaatccacaaatgaagcgcctt
cgtggcggtgtggatgtattgattgccaccccgggacgtttgctggacttgtatcagcaa
aatgcggttaaattcagcgatctggaaatgctggtattagatgaagccgaccgtatgctg
gacatgggctttatccatgatatcaaacgtattttgaagctgttgccagccaaacgccag
acgatgctgttctcggctacctttgccggtaccgtcaccgagctggctgagtctattact
cgtcagccggtcaagctttccaccgcgccggccaacaccaccgtggaaaaaattgatcaa
cgtctggtgccactggataaaaaccgcaagattgcggcgcttatttccatggccaaacag
cagagctgggaacaggcattggtgtttagccgtaccaaacatggcgccaaccgaattgct
aaaaagctggaagccgccggcatccccagtgcggcgattcatggtaacaagagccagggt
gcgcgcaccaaagccttggccgcatttaaagatggttcggtaaagattctggtggccacc
gatattgctgctcgtggtctggatatcagccagttgccggtggtggttaatctggatttg
cctaataccgcggcagactatgttcaccgtattggccgtaccggtcgtgctggtgcgtcg
ggccaggcctggtctctggttagtgctgatgagtacgaacaactgaaagacattgaaacg
ctgattcagcagctgttgccgcgggaaaccttaaaaggatttgagccgcagttaagcttg
cgtgaaaccaccttgtcagcacctaagaagccaggcaaaccgaaaaaaccgaaagcaaat
tcggccggtcgtcgcgatggtggtcgtggacaaaatgatagccgcggccaaaataatggc
ccggcgcgtcgtcgtcaggccaagccgcatcgtcagaccgaacaggcttaa
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