Salinimonas marina: IT774_09410
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Entry
IT774_09410 CDS
T07441
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
smaa
Salinimonas marina
Pathway
smaa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smaa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IT774_09410 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smaa03019
]
IT774_09410 (rne)
03009 Ribosome biogenesis [BR:
smaa03009
]
IT774_09410 (rne)
Enzymes [BR:
smaa01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
IT774_09410 (rne)
Messenger RNA biogenesis [BR:
smaa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
IT774_09410 (rne)
Ribosome biogenesis [BR:
smaa03009
]
Prokaryotic type
rRNA processing factors
IT774_09410 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
QPG04472
UniProt:
A0A7S9DV99
LinkDB
All DBs
Position
2131599..2135207
Genome browser
AA seq
1202 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDY
GAERHGFLPLKEIARTYFPKGYKFEGRPNIKDVIKEGQEVIIQIDKEERGQKGAALTTFL
SLAGSYLVLMPNNPRAGGISRRIEGDERTELKQAMSKLEIPDGMGLIVRTAGVGKSYEEL
DWDLRVLLKHWEAVSEEASKRPAPFLIHQESNVIVRAIRDYLRRDIGEILVDKSAIYEQA
LQHIQLVRPDFANRVKKYDGDVPLFSHYQIESQIESAFQREVRLPSGGSIVIDPTEALTS
IDINSARATKGGDIEETALNTNLEAADEIARQLRLRDAGGLVVIDFIDMTPVRHQREVEN
RLKEAVRNDRARVQLGRISRFGLLEMSRQRLRPSLGESSHHVCPRCSGHGTIRGTESLAL
SILRIMEEESIKDNTGQIEAQVPVAVATYLLNEKRKSVNVIEKRHNVNLLIIPNANLETP
HYEVTRRRPEEIIKDASYEVSLLETPSSDADKPAATVAKREEPAIKGMVAPDAAPVVPPK
PVAQPKPAEASTSLLGQVSKWLKGLLGSAETEQQTATETDKSESGSQNQRSRNQQDQRNR
KPRNNNKQRRGRTGDRNDRSDKGEREETQTHGSKGQGQSQNTNERRGKNAPSNRKPRKPR
EEKSDTRQESKPVAETTSPAANKDTKETQPAPKKKQLAERRKRRDMRRSVRVGNEVAADS
QKADEKSVNSAQADASQYSAKEPSQARHSAEQVSEHEPVVNTKAESGEDNKREGNGSRGR
SRRSPRHVRAAGQRRKKEQNDTDATSFDSDSTNQQSQEQVPVVEQQPRPTPDERVADDIV
AADTQNRGQAGQSAPDAPRSDINETTGQPVEQPAQLDSEILSQPAADVEPEVMPEKKATT
NFAQKPRQKYRADGMSTDNQAEQSQAHAENPENAVSKVQSATSSDHATKQAKDKKAQAEA
APKAADQPAAVSTPAVSAPSDTTAASDTTAAPETADKPETNQPEASETVEPPETEQSEVV
TGGDTLSQAESEANQVPETASSEAATPAQREQEMPVPADTNTGTPAVALEAAEASDVAGG
HEGTTDTAVNSPAATSQASAAAQAPASQAQAPTPATKPESARAGVTQSVTEVLMASSRGK
FNASHPTALPAQVNDQFGDVSLTARDDSARPALDVSGRTAALAHSKSKASAPMAKPGSSN
AA
NT seq
3609 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgctaataaatgcaactcagcaagaagagttgcgcgtcgcgctagtcgat
ggccagcgcctgtacgacctggacatagaaagtccgggccacgagcaaaaaaaagccaat
atctacaagggtaaaattactcgcgtagagccgagtctggaagctgcttttgttgactac
ggcgccgagcgtcacggctttctgccgctaaaagaaattgcccgcacttacttccccaaa
ggttataaattcgaaggccgtcctaacatcaaggatgtgataaaagaaggccaggaagtc
atcattcagattgataaggaagagcgtgggcaaaaaggcgccgcgcttaccaccttccta
tctttagcaggtagctacctggtgctgatgcccaataatccccgggctggcggtatcagt
cgtcgcattgaaggcgatgagcgtaccgaattaaaacaggcgatgagcaaactggagatt
ccagatggcatgggcctgattgtgcgcaccgctggggtaggcaaatcctatgaagagctt
gactgggacttacgggtgctgcttaagcactgggaagcagtgagcgaagaagccagtaag
cgccctgccccgtttcttattcaccaggaaagcaatgttattgtacgtgctatccgcgac
tatctgcgtcgtgatatcggtgaaatcctggtagataaatccgctatttatgaacaggcg
ctgcaacacattcagttggttcggcctgactttgctaatcgtgtgaaaaaatacgatggt
gatgtgccgctattcagtcattatcaaattgaaagccagatcgagtcagcctttcagcgt
gaagttcggttgccttctggcggctcaattgtcattgatcctaccgaagccttaacctcc
attgatattaactcggcgcgcgctaccaaaggtggcgatattgaagaaaccgcgctgaat
accaacctggaggcagccgatgaaattgctcggcagctacgcttgcgggatgccggcggc
ctggtggtcattgactttatcgatatgaccccggtgcgccatcagcgtgaagtcgaaaat
cgtttgaaagaagcggttcgcaatgaccgggcgcgggtacaactgggacgtatatcccgg
tttggtctgcttgaaatgtctcgtcaacggttgcgcccttccctgggtgagtccagtcac
catgtgtgtccgcgctgttcgggccatggcaccattcgtggtactgagtcgctggcgttg
tctattcttcggatcatggaagaagaaagcatcaaggacaataccggccagattgaagcc
caggttccggtggccgttgccacgtacctgctgaatgaaaaacgtaagtcggtaaatgtg
attgagaagcgtcataatgtgaatctgctgatcattccaaatgccaatttagaaacgccc
cattatgaagttacccgtcgtcgccctgaagaaattatcaaggacgccagctacgaagta
tcactgctggaaacgccttcttcagatgcggataagcctgccgccaccgtcgccaagcgc
gaggaaccggcgattaaaggcatggttgctcctgatgccgcgcctgtggtgcccccaaaa
ccggtagcccagccaaaacctgccgaagcctctacctcgttgttgggtcaggtgtcgaaa
tggctcaaaggtctgcttgggtcagcagagaccgagcaacagactgcaacagaaaccgac
aagagcgagtctggttcgcaaaaccagcgttcgcgtaatcagcaggatcagcgcaatcgc
aaacctcgcaacaataacaaacagcgccgtggtcgcactggtgacagaaacgaccgcagt
gacaaaggtgagcgtgaagaaacccagactcacggcagcaagggtcagggacaaagccag
aataccaacgagcgccgcggcaaaaatgcaccgtctaaccgcaagccccgtaaacctcgt
gaggaaaaatccgataccagacaagagtctaagccggtagcggagactacatcgcctgca
gccaacaaggacaccaaagagacccagccggcacctaagaaaaaacagctggcagaacgt
cgtaagcgtcgggatatgcgtcgtagcgtgcgcgtgggtaacgaagtggcggcggattcg
caaaaagctgatgaaaagagtgttaactcagcgcaggctgatgcttcgcaatactcagcc
aaagaaccatcgcaagcccggcactctgctgagcaggtctctgagcacgagccggtagta
aataccaaagcggagtctggagaagataacaagcgcgaaggtaatggcagccgcggacgc
agtcgtcgttcaccccgccatgttcgcgctgcgggtcagcgtcgcaagaaagaacaaaat
gataccgacgctacaagcttcgattcagacagcacgaatcagcagtctcaggaacaggtc
ccggtggttgagcaacaaccacgccctacccctgacgagcgcgtagctgatgacatcgtt
gcggcagatacccagaaccggggtcaagccggtcagtctgcacctgatgctccacgtagc
gatatcaatgaaacaaccggccagcctgttgaacagcctgcacagcttgatagcgaaata
ttgtcacagccagcagcggacgttgagccagaagtcatgcctgagaaaaaggcaacgact
aactttgcgcaaaaaccgcgtcagaaatatcgtgccgatggcatgagtactgacaaccag
gctgagcaatcccaggcgcatgccgaaaatcctgagaacgcggtaagcaaggtgcaatca
gcaaccagctcagaccatgctacaaagcaggctaaagataaaaaagcccaggcggaagct
gcacctaaagcagcagaccagcctgccgcggtatctacacctgcggtgtcggcaccgtct
gataccacagctgcatctgataccacggctgcgcctgaaaccgcagataaacctgagacc
aaccagccggaggcgtctgagaccgttgagccacctgaaactgaacagtctgaggttgtc
accggcggtgacacgctttctcaggctgagtcagaggctaatcaggtgccggaaactgcc
agcagtgaagctgctacacctgcgcagcgcgagcaagagatgccggtgcccgccgacaca
aacaccgggacccctgctgttgctttagaagctgccgaagcttctgatgttgccgggggc
cacgaaggtaccactgacacggctgtaaatagccctgccgcgacgtcacaagccagcgct
gcagcccaggcccctgccagtcaggctcaggcacctaccccggccactaaaccggaaagt
gcgcgtgctggggtcacccagagcgtgaccgaggtgttgatggccagcagcaggggtaaa
ttcaatgcctcgcatcctacggccctgccggcccaggtaaatgatcagttcggtgatgtc
agccttactgctcgagatgatagtgcccgcccggcactggatgtctccggccgcactgcg
gcactggctcacagcaagtccaaggcgtcggctcccatggccaagcctggtagcagcaac
gctgcttaa
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