Salinimonas marina: IT774_13825
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Entry
IT774_13825 CDS
T07441
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
smaa
Salinimonas marina
Brite
KEGG Orthology (KO) [BR:
smaa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
smaa03009
]
IT774_13825 (rlmD)
Enzymes [BR:
smaa01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
IT774_13825 (rlmD)
Ribosome biogenesis [BR:
smaa03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
IT774_13825 (rlmD)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
TRAM
Methyltransf_25
Methyltransf_37
Methyltransf_11
Methyltransf_31
TRM5-TYW2_MTfase
Methyltransf_15
RrnaAD
Motif
Other DBs
NCBI-ProteinID:
QPG05190
UniProt:
A0A7S9DWK5
LinkDB
All DBs
Position
complement(3079307..3080662)
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AA seq
451 aa
AA seq
DB search
MVSFYKPEKKSSNNKPKVLKDIRIDSLDMQGNGVCRSQQPVLFVEGALAGETVNVRITHA
QKQTARAITTKVVTPSDKRQQPFCEVYQQCGGCQLQHVDADSALTERQQAMSDYWTRQFG
LQDLPWQPALTGPRPQYRRKARLAIDGRTPGAVKLGYRRQGSNAVVDIPDCPILVPSLQA
LIVPLKTLLNQHPNSRHLGHIQVLAGDNIAQISVKTSRDLSEAMHQDLAAFGEQHQCNVV
LEDQHNKQHPLHHKATLVCHTEDNLQLTPAPEDFVQVNATVNQKMIAQAMAWLAPQPGEV
IADWFAGLGNFALSLAQRGARVHAVEGVAAMVAKGQANAQAQGIDSIQWQHQDLSDPKVV
EAALTADFDKVILDPSREGAQAVCEALARHPVSKVVYVSCNPSSFTRDLRLLLAAGYQVE
KIGLVEMFPYTRHLEVMALLSFPRNVTVKAS
NT seq
1356 nt
NT seq
+upstream
nt +downstream
nt
atggtcagcttttacaagccggaaaaaaaatcttccaacaacaaaccaaaagtgttgaaa
gatattcgtatcgacagtctcgatatgcagggcaatggcgtatgccgtagtcagcagccc
gtcctgttcgtggaaggtgccctggccggtgaaacggtcaatgtccgcatcacgcatgca
caaaaacaaacggcccgggccatcaccaccaaagtagtgacgcccagcgacaagcgccag
cagcctttttgtgaggtgtatcagcagtgtgggggctgtcagttacaacatgtggatgca
gacagtgccctgactgaacgccagcaggcgatgagcgactactggacccggcaattcggg
ttgcaagatctgccctggcagccggcattaaccggcccgcgcccacagtatcggcgcaaa
gcccggctggccattgatggtcgcacccccggtgcggtcaaactgggttatcgccggcag
ggcagcaacgccgtggtggatatccctgactgtccgattctggtgccctcgttacaggca
ctgatagtgcccttaaaaacactgcttaatcagcaccccaacagtcgccacctgggtcat
atccaggtgttggccggtgacaacatcgcccagataagtgttaagaccagccgcgatctg
agtgaggcgatgcaccaggatttagccgccttcggagagcagcatcagtgtaatgtggta
cttgaagatcaacataataagcagcacccactgcatcacaaggcgactctggtgtgccat
accgaagacaatttgcagctgacgcctgcgcccgaggactttgttcaggtcaatgctacg
gtgaaccaaaaaatgattgctcaggcaatggcatggctggcgccgcaaccgggtgaggtg
attgccgactggtttgccggtctgggtaattttgccttgtcactggctcagcgtggcgcc
cgggtgcacgccgtggaaggggttgcagcaatggtcgctaaagggcaggcgaatgcccag
gcccagggcattgatagcattcagtggcaacatcaggatttgtctgatcccaaagtggtc
gaagccgcgctaaccgccgattttgataaggttattctggatccttcccgtgaaggcgcg
caggctgtctgtgaggcgctggcccgacatccggtgagcaaggtggtgtatgtctcgtgt
aatcccagcagttttacccgggatttacggctgttgctggcagccggatatcaggtggaa
aagattgggttagtcgagatgtttccctatacccgtcatctggaagtcatggcattattg
tcgtttccccgaaatgtcacagtcaaagcgagttga
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