Sulfurovum mangrovi: LN246_00020
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Entry
LN246_00020 CDS
T09512
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
smab
Sulfurovum mangrovi
Pathway
smab03410
Base excision repair
smab03430
Mismatch repair
smab03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
smab00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
LN246_00020 (recJ)
03430 Mismatch repair
LN246_00020 (recJ)
03440 Homologous recombination
LN246_00020 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
smab03400
]
LN246_00020 (recJ)
DNA repair and recombination proteins [BR:
smab03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
LN246_00020 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
LN246_00020 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LN246_00020 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
TPP_enzyme_N
DUF6880
Motif
Other DBs
NCBI-ProteinID:
UFH59261
LinkDB
All DBs
Position
4422..5897
Genome browser
AA seq
491 aa
AA seq
DB search
MERATARIVEAIQNREKITIIGDYDVDGVVSTTLMKRFFEEIEYPVEWIIPNRFRDGYGL
SSNIIPRILGTDLAITVDNGISAVEAAKLCKEEGIELIITDHHIPGEILPEAFAIVNQKQ
DECTFPYHEVCGAQVAWYLIASLKNALDVKIDMISYMELAAIAIIADVMPLQHINRAMVN
SGLKSLSKSGYPAIRAFLEQSQKSECSSEDIAFFLAPLLNSAGRMEDALHAVEFLSSKNI
YDARVRFERLQGFNTLRKETEEQITNEALSQVNPEDKVIVVWGEEWHEGVVGIVAARVAR
VHKKPTIVLSHNGNGILKGSGRSVDSCDLFELTDACRGYLDKFGGHKAAVGLSLREENLE
AFKERLQEEYQRKAYRPLTIDPEIVGILDFGSISFDLTTMIKKYEPFGEGNTRPKFITQN
VRIVEAATMGKDNNHLRFTFEKDGCLLKGVKFKTTEQFESDSFADITYRVNENHFNGRKS
LQLYIDNIVKL
NT seq
1476 nt
NT seq
+upstream
nt +downstream
nt
atggagagagcaaccgcccgcattgtagaagcaatacaaaaccgtgaaaagattacgatt
atcggtgattatgatgtcgatggtgtcgtctctaccacactgatgaaacgattttttgaa
gagattgagtaccctgtagagtggatcattcccaaccgatttagagacgggtacggtctc
tcaagtaatattatcccgcgtattttaggcacagaccttgccatcacggtagataacggt
atttcagccgtagaagctgccaaactctgtaaagaagaggggatagagttgatcattacc
gatcaccatatccccggagagatactgcctgaggcctttgccattgtcaatcaaaagcag
gatgagtgtactttcccctatcacgaagtatgtggagcacaggttgcatggtatctgatc
gcttcacttaaaaacgcactggatgtcaaaatcgacatgatcagctatatggagttggca
gcgatcgcaatcatcgccgatgtcatgccgcttcagcatatcaaccgtgcgatggtgaac
agtgggctgaagtccctctcaaaaagcggctatcctgcgatcagagctttcctggagcag
agtcagaagagtgagtgcagcagtgaagatatcgcattttttcttgcaccgttgcttaac
agtgcagggcggatggaagatgcgctgcatgcagtggagttcctctcttcaaagaacatc
tatgatgccagagtaaggtttgaaaggcttcagggctttaataccctgagaaaagagaca
gaagagcagatcaccaatgaagcactcagccaggtaaatccggaagataaggtgatcgtt
gtctggggtgaggagtggcacgaaggcgttgtagggatcgttgccgcaagagttgccaga
gtgcataaaaaaccgacgatcgtgctttcgcataatggtaacgggatattgaaaggaagc
ggaagaagtgtggacagctgcgatctttttgagctcactgatgcatgtaggggatacctg
gataagttcggcggtcataaggcggcggtcggtttatctttaagagaggagaatcttgaa
gctttcaaagagaggttgcaggaagagtatcagcgtaaagcatacagaccgcttacgata
gatcctgagattgtcggtatcctggattttggatcgatcagttttgatctgacgacaatg
atcaaaaagtatgaaccctttggggaagggaataccagaccgaagtttattacccaaaat
gtacgtatagtggaagctgctacgatgggcaaggataacaatcacctcaggtttactttc
gaaaaggacggttgccttcttaaaggggtgaagtttaaaactaccgagcagtttgagtca
gacagctttgcagatattacctatagggtgaatgaaaaccatttcaacggaagaaaaagc
ctgcaattatatattgataatattgttaaattatag
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integrated database retrieval system
