Sulfurovum mangrovi: LN246_02840
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Entry
LN246_02840 CDS
T09512
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
smab
Sulfurovum mangrovi
Pathway
smab03030
DNA replication
smab03430
Mismatch repair
smab03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
smab00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LN246_02840 (dnaE)
03430 Mismatch repair
LN246_02840 (dnaE)
03440 Homologous recombination
LN246_02840 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
smab03032
]
LN246_02840 (dnaE)
03400 DNA repair and recombination proteins [BR:
smab03400
]
LN246_02840 (dnaE)
Enzymes [BR:
smab01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
LN246_02840 (dnaE)
DNA replication proteins [BR:
smab03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
LN246_02840 (dnaE)
DNA repair and recombination proteins [BR:
smab03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
LN246_02840 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
MoCF_biosynth
Motif
Other DBs
NCBI-ProteinID:
UFH59789
LinkDB
All DBs
Position
570540..574115
Genome browser
AA seq
1191 aa
AA seq
DB search
MSEEPKNVPQYTHLHLHTEYSLLDGANKIKALAKKVKELGMNSVAMTDHGNMFGTIDFYN
TMRKEGIKPIVGMEAYVHNQPDIGDKSIRQRFHLCLYAKNDVGYKNLMYLSSQAYLNGFY
YYPRINWDMLKEHAEGLVCSSACLQGEVNWHLNLSDRNVKFGAKGYDEAKRVALRYKEVF
GDDFYLEIMRHGIGDQYNIDKQIIQLSQETGIKIVATNDTHYTNPQDADAHEAFMCIAMN
KLYDDPNRMRHSVHEFYVKSPEEMAKLFADIPEALEATQEIADKCNLEIKLGNPTPPNFK
FAREKAAAIGLELPEPDEEYSLANDTALFIEESRRGLEERLKIVDPSKHQEYRERLQTEI
DIITSMKFPGYMLIVWEFVDAAKQMGIPVGPGRGSAAGSLVAYALRITDIDPMPYGLLFE
RFLNPERVSMPDIDMDFCQARRQEILDYVIDKYGRVNVAQIITFGKLLAKGVIRDVARVL
DMPYSKADAMAKLIPDELGIDLKNSYEKEPKIKELLESDPLAARTWKYALALEGLNRNAG
THAAGVVISNEPLWKKTPLFKPSGLDTLATQYSGKYVEDVDLIKFDFLGLKTLTVVEEAN
KLVEKRHGKRIDFVKENINDRGVYDYISTGETLGLFQIESAGMQDLAKKLKPSGFEDVIA
MLALYRPGPMESGMLDDFVERKHGRAEITYMFPELEPILKPTYGVIVYQEQVMQIVQTIG
GFSLGGADLVRRAMGKKIKEEMDKLKEQFAEGAEEKGFNRTKAEELFDLIVKFAGYGFNK
SHSAAYALVTFYTSFLKRYYPTEFMAAILTLEKNNTDKVVKYVDELKRMDIDLLPPDVNI
SGLVFEAKELEGREVVMFGMGAIKGAGDIAIKSILEARKEGEFRDLSDFVSRIDSSKVNK
KVIESLIKAGALDCFGYSRHAMLSQVEDIIEAAKKSADAKKMAENSLFGGGAEMTAVTLT
LSEMPEFEPMEILEMEKASLGFYVSGHPLDKFRETLEGINYTLSSEIDDLADGSQALFIG
KIEEITEKISKKGNKFGIANIMDLHGNIELMLFENRLKELEEDFDITKPIAFKVKITKDG
DFTRMNILKIESLKDAKKEKIKVKKEEKHVEEPEQPPLILALNLMPDPKIAEELMCLAAK
YPGKRPLELHIKSKLADVVIESKMKVSELMLEEAKELGVYLEEALVVEETA
NT seq
3576 nt
NT seq
+upstream
nt +downstream
nt
atgtcagaagaaccgaaaaacgtaccacagtatacccatttgcacctccatacggagtac
tcgttactggatggggccaataagatcaaagccttggccaagaaggtgaaagagctaggt
atgaattcggtcgcgatgaccgatcacgggaatatgttcggtacgatcgacttctacaat
acgatgagaaaagaggggatcaagcctatcgtcgggatggaagcgtatgtacacaatcag
cctgatatcggagacaagagtatccgccagcgttttcacctctgtctctatgccaaaaat
gatgtggggtataagaacctgatgtaccttagttcccaggcgtatctgaacgggttttac
tactacccccgtatcaactgggatatgcttaaagagcacgctgaaggtctggtctgtagc
tccgcctgccttcagggtgaggtgaactggcacctgaacctctccgaccgtaacgtaaag
ttcggggctaaagggtatgacgaggcgaaacgcgtagctctcaggtacaaagaggtcttt
ggggatgatttctacctggagatcatgaggcacggtatcggtgaccagtacaatatcgac
aaacagatcattcagctctcacaggagacggggatcaagatcgtcgctaccaacgatacc
cactataccaatccacaagatgcagatgcacacgaagccttcatgtgtatcgcaatgaac
aaactctatgatgaccctaaccgtatgcgtcactcggtccatgaattttatgtcaagtcc
cctgaagagatggcaaagctctttgccgatatccctgaagcgcttgaggctactcaggag
atcgccgataagtgtaacctggagatcaaactgggtaacccgacacctccgaatttcaag
ttcgccagagagaaagcagcagcgatcggtctggaactgcctgaaccggatgaagagtac
tctttggccaatgatacggccctctttatcgaagagtcaagacgggggctggaagaacgt
ctgaagatcgtagacccctccaaacaccaggagtaccgtgaaagactacagacagagata
gatatcattaccagtatgaaattccctggatatatgctgatcgtatgggagttcgttgat
gcagccaaacagatgggtataccggtaggtcccgggcgtggatctgcagcgggatctctg
gtcgcctatgccctgcgaattaccgatatcgatccgatgccttacggcctgctctttgag
cggtttctgaatcccgagcgtgtatcgatgccggatatcgatatggacttctgccaggcc
cgccgtcaggagatacttgactatgtgatcgacaaatacggacgggtgaacgtggcccag
atcattaccttcggtaaacttcttgccaaaggggtgatccgtgatgttgcgcgggtactg
gatatgccttactccaaggccgatgcgatggcaaaactgatcccggatgaactggggata
gacctgaaaaattcgtatgagaaagagcctaagatcaaagagctcctagagagtgatcct
ctggcagcacgtacctggaagtatgcgctggcacttgaaggtctgaaccgtaatgccggt
acccatgccgcaggggtggtgatctcaaatgaaccgctctggaaaaagacgccgctcttt
aaaccttcaggactcgatacgcttgcaacacaatacagcggtaagtatgtcgaggatgtg
gacctgatcaagttcgacttccttggactgaaaacacttactgtcgttgaagaggccaat
aaactggtggagaaacgccacggaaagcgtatcgactttgtcaaggagaatatcaacgac
agaggtgtctatgactatatctctaccggtgaaacactggggctgttccagatcgaatcg
gcgggtatgcaggatctggcgaagaaactgaagccgtcaggctttgaagatgttattgcg
atgcttgcactctatcgtccgggtccgatggagtcggggatgctagatgactttgttgag
cgtaaacacggacgtgcggagatcacctatatgttccctgagcttgaaccgatactcaaa
ccgacctacggggttatcgtctaccaggaacaggtgatgcagatcgtacagacgatcggt
ggtttcagtctcggtggtgcagaccttgtccgtcgtgcgatggggaaaaagatcaaggag
gagatggataagctcaaagagcagtttgccgaaggtgccgaggaaaaaggctttaaccgg
accaaagcggaagagcttttcgacctgatcgtgaagtttgccggatacggatttaacaaa
tcccactctgcagcctatgcactggttacgttctatacctccttcttgaagcgctactat
cctacggagttcatggcggcgatcctgactctggagaagaacaacacggataaggttgtc
aagtatgtcgatgagctgaaacgtatggatatcgaccttttgccaccggatgtcaatatc
tccggactcgttttcgaggcgaaagagctggagggaagagaagttgtcatgttcggtatg
ggggcgatcaaaggtgcaggcgatatcgcgatcaagtctatcctggaagcacgtaaagag
ggagagttcagggacctgagcgactttgtctcaaggatagactccagcaaggtcaataaa
aaggtcatcgagtcactgatcaaagccggggcacttgactgtttcggctactcccgccat
gcaatgctctcccaggtagaggatatcatagaggcagccaagaagtcggccgatgcgaaa
aagatggcagaaaactcactctttggcggcggtgcagagatgactgctgtgacgttgacg
ctttcggagatgcctgagtttgaaccgatggagatcctggagatggagaaagcgtcgctt
ggattttatgtatcggggcacccgctggacaagttccgtgagacgctggagggtatcaac
tatacattgagttccgagatcgatgatcttgctgacggatcacaggcactctttatcgga
aagatcgaggagatcactgaaaagatcagtaaaaaagggaacaaattcggtatcgccaac
attatggacctgcacgggaatatcgaactgatgctctttgaaaatcgcctcaaagagctt
gaagaagattttgatattaccaaaccgatcgcctttaaggtaaagatcaccaaagacggt
gattttacccgtatgaatattctcaagatagaatcactcaaagatgccaaaaaagagaag
atcaaagtgaaaaaagaggagaagcatgttgaagagcctgagcagccaccgcttatactg
gcactcaatctcatgcctgatcccaagatcgcagaagagctcatgtgtttggctgcaaag
tatccgggtaaacggccgcttgaactgcacattaaatccaagctggcggatgtagtgatc
gaaagcaagatgaaagtcagtgagcttatgttggaggaagccaaagagctgggtgtctac
ctcgaagaggcattggttgttgaggagaccgcttaa
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