Sulfurovum mangrovi: LN246_03530
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Entry
LN246_03530 CDS
T09512
Symbol
rny
Name
(GenBank) ribonuclease Y
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
smab
Sulfurovum mangrovi
Pathway
smab03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LN246_03530 (rny)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smab03019
]
LN246_03530 (rny)
Messenger RNA biogenesis [BR:
smab03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LN246_03530 (rny)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KH_2
KH_KhpA-B
KH_NusA_C
DUF4416
Motif
Other DBs
NCBI-ProteinID:
UFH59924
LinkDB
All DBs
Position
677153..678679
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AA seq
508 aa
AA seq
DB search
MIEIIGLSSIAGVAVGAVGSYFWLKSSTQSKFSYMELESKAKAKAIEHEAEQLLESSKVK
IKANEIEQEREYQKRLSKLDERHRSLILEQKEVESEAKSLEEKSKRLQREELNLEKLEQK
KQHVISEAVEKMEHIASLTREEAKAYILQKVEEQSRADIADIVRKYEQEAKVEGEKKANY
ILAQATTRYAGEFAGERLINTITLPSDEHKGRIIGKEGRNIKSLEMLLGVDIIIDETPGV
IVVSSFNLYRRAIATRVIEILVEDGRIHPARIEEVHEKVQKEFEQKTYEEGENIVIDLGL
YPMAEELIRLLGRMKYRASYGQNALVHTLEVANLAKVMAANMGGDEKLALRAGLLHDIGK
ALTQEHGGSHVELGAELCRKYHEHPTVINAIYAHHGYEEPDSVESAAVCAADTLSAARPG
ARREVLESFTKRIEEIENIATAKAYVTSAYAINAGREIRVFVNADKLSDSESVLLSKEIA
KEIEEKVQYPGEIKVNVIRETRATAYAK
NT seq
1527 nt
NT seq
+upstream
nt +downstream
nt
atgatagagataattggactctcctccatagcaggagtcgccgtaggcgcagttggtagc
tacttttggttaaaaagcagtacacaaagtaagttctcctatatggagttagagagtaaa
gcaaaagcaaaagcgatcgagcatgaagctgaacaactgcttgagagcagtaaagtaaaa
atcaaagcgaacgagatagagcaggagagggagtatcaaaaacgtttatctaaactggat
gaacgccatcgttccctgatccttgagcaaaaagaggtggagtctgaagcaaaaagtctc
gaagagaagagcaaaaggctgcagagagaagagctaaaccttgaaaagttggagcagaag
aaacaacatgtgatctctgaagcagtcgaaaagatggaacatatcgcttctcttaccaga
gaagaggcaaaagcctatatcctgcaaaaggtagaagagcagagccgtgcggatatcgca
gatatcgtacgcaagtatgagcaggaggccaaagtggaaggagagaaaaaggccaattac
attcttgcccaggcgacaacacgctatgcgggagagtttgccggtgaacgtctgatcaat
acgattacacttccgagtgatgaacacaaaggccgcattatcggtaaagagggacgaaat
atcaagtctctggagatgcttttaggggtagatatcattatcgatgagacacctggagtg
atcgtagtaagctctttcaacctttacagaagggcgatcgcgacacgtgtgatagagata
ctggtagaggatggacgtatccatcctgcccggatcgaagaggtacatgaaaaggtccaa
aaagagtttgaacagaaaacctatgaagagggtgagaatatcgtcattgatctcggactc
taccctatggcagaagagttgatccgtcttctgggccgtatgaaatacagagcgagttat
gggcaaaatgctctggtacatacgcttgaagtggctaatttggcgaaagtgatggcagcc
aatatgggcggggatgagaaacttgccttgcgtgctggacttctgcatgatatcggtaag
gcattgacccaggagcatggagggtcgcatgtagaactgggtgcagaactttgccgtaag
taccatgaacacccgacagtgatcaatgcgatctatgcacaccacggatatgaagagcct
gactcggtagaatccgctgcagtttgcgcggcagatacactctccgctgccagaccggga
gcaagacgtgaagtacttgaaagtttcaccaaacgtatagaggagatagaaaatatcgct
acagccaaagcgtatgtgacaagtgcctacgcgatcaacgccgggcgtgagatacgtgta
tttgtcaatgcagacaagctttcggatagtgaatcagtacttttaagcaaagagatcgcc
aaagagattgaagagaaggtacagtatcccggggagatcaaagtcaatgtgatcagagag
acaagagcgacagcctatgccaaataa
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