Sulfurovum mangrovi: LN246_05880
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Entry
LN246_05880 CDS
T09512
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
smab
Sulfurovum mangrovi
Pathway
smab03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LN246_05880
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smab03019
]
LN246_05880
03009 Ribosome biogenesis [BR:
smab03009
]
LN246_05880
Enzymes [BR:
smab01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LN246_05880
Messenger RNA biogenesis [BR:
smab03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LN246_05880
Ribosome biogenesis [BR:
smab03009
]
Prokaryotic type
rRNA helicases
LN246_05880
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_30
AAA_22
GlgB_N
AAA_19
API5
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
UFH60381
LinkDB
All DBs
Position
complement(1151664..1153151)
Genome browser
AA seq
495 aa
AA seq
DB search
MTFTDFNLKESIQSAIAEAGFKEPSPVQKEAIPLVLEGHDMIAQAQTGTGKTAAFGLPTM
SMMQADGSVEGLVIVPTRELAMQVSDELYRFGKNAGLKTATVYGGTAYGKQIERIRQASI
VVATPGRLQDLLESGKIKISPKFVVLDEADEMLDMGFLDEIKNIFKFMPKERQTLMFSAT
MPKAIRKLAEEILENPKTVSITKSETTNTKITQQYYVVKESERDDALVRLIDYKNPTKCI
IFCRMKKEVDRLVAHLTAQGFKVSGLHGDMEQKQREVTIRAFKQGGIDIFVATDVAARGL
DVNDVTHVFNYHIPFDSESYVHRIGRTGRGGKSGEAITLVSPNELRTIKRIEKDVGTQMS
TEIIPTRMEVQNAKANELITKIAETRVTESAINLVKTLQHDLDIVTIAHLLASMIQEENE
VKGKDKIGLSHEEIAQAFERSKDERNKKNRGRGGQRRRRDDRNRNESGGNRRPRSRKSSG
SGRDSRNGGRGSNRG
NT seq
1488 nt
NT seq
+upstream
nt +downstream
nt
atgacatttacagatttcaacctcaaagagagtatccagtctgctatcgcagaagcagga
ttcaaagagccaagccccgtacagaaagaggccatccctctcgtccttgaaggacacgac
atgatcgcacaggcacagacgggtacaggtaaaaccgctgccttcggtctgccgaccatg
agtatgatgcaggcggacgggagtgttgaagggttggttatcgtccctacccgtgaactt
gcgatgcaggtcagtgatgagctctatagattcggtaaaaatgccggacttaaaacagcg
accgtctacggcggtactgcgtacggcaaacagatagagcgtatcagacaagcctctatc
gttgtagcgactccgggacgtcttcaggacctcctggagagcggaaagatcaagatcagt
ccaaagtttgtcgtacttgatgaagccgatgagatgcttgatatgggattcctcgatgag
atcaagaacattttcaagttcatgccgaaagagcgccagacactgatgttctcagctacg
atgccaaaggcgatccgtaaactggctgaagagattcttgaaaacccgaaaactgtctct
atcacaaaatcagagacgaccaacacgaagatcacacagcagtactacgtggtaaaagag
agtgaaagagatgatgcgcttgtaagacttattgactataaaaacccgacgaagtgtatc
atcttctgccgtatgaaaaaagaggtagacagacttgtagcacacttgacagcgcagggc
ttcaaggtaagcggtctgcacggtgatatggagcagaagcagagagaggtaacgatccgt
gccttcaaacagggcgggatcgatatctttgtggcaacggatgtcgcagcgcgtggtctg
gatgtcaacgatgtaacccatgtcttcaactaccatatcccgtttgactccgagtcttac
gtacaccgtatcggacgtacaggtcgtggtgggaaatcaggtgaggcgatcactctggta
agcccgaacgaactccgtacgatcaaacgtatcgaaaaagatgtcggtacacagatgagc
acagagatcatccctacccgtatggaagtacaaaatgccaaagccaatgagcttatcaca
aaaatcgctgagaccagagtgacagagagtgccatcaacctggttaagactctgcagcac
gaccttgatatcgtgacgatcgctcacctccttgcatcaatgatccaagaggagaatgaa
gtcaaaggtaaagacaagatcggtctaagccatgaagagatcgcacaagccttcgagaga
tcaaaagacgagagaaacaagaagaacagaggcagagggggccaaagaagaagacgtgat
gaccgcaaccgcaatgaaagcggcggaaacagacgccctagaagccgtaagagcagcgga
agcggacgtgacagccgcaacggcggacgcggaagcaacagagggtaa
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