Sulfurovum mangrovi: LN246_06955
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Entry
LN246_06955 CDS
T09512
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
smab
Sulfurovum mangrovi
Pathway
smab03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LN246_06955
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smab03019
]
LN246_06955
Enzymes [BR:
smab01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LN246_06955
Messenger RNA biogenesis [BR:
smab03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LN246_06955
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
P-loop_SecA
Utp25_C
HI1480
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
UFH58087
LinkDB
All DBs
Position
complement(1356983..1358299)
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AA seq
438 aa
AA seq
DB search
MSFSTLGLSQSLLKAIKETGYTKPTPIQAQAIPLIIQKRDVLAAAQTGTGKTAGFTLPLL
ERLSQSKPNMNKYQIRALVLTPTRELAAQVHESVKTYGKHLPYRSAVIYGGVGINPQLAT
IRKGVDIVIATPGRLLDIAGKKGIDFSKLECLILDEADRMLDMGFIHDIKRLIKMMPSER
QTLLFSATFSPEIKKLASGLLKEPAVVEVARENSTGEQISQVVHYVDKHRKRELLTQLIK
TKKWEQVLVFTRTKHGANRLSKQLEESGIKAAAIHGNKSQGARTKALASFKAKEIRVLVA
TDIAARGLDIDQLPHVVNFELPNVPEDYVHRIGRTGRAGNVGEAVSLVCIDELDLLANIE
KLIKKEIKKVDIPAFAPDPNIKAEPIQKGRSQKPKRDQHKSGSRSNRSEKKEKSESKEGR
RGNSRNRKSNKNNRGNRS
NT seq
1317 nt
NT seq
+upstream
nt +downstream
nt
atgtcattttctaccttgggactctcccaatctctacttaaagccatcaaagagacagga
tatacgaaacctactccgatacaggcccaggctattccgcttatcatccaaaagagggat
gtattggctgctgcacagaccggtacggggaaaaccgccggttttacgctgcctttgctt
gaaagactgagccaaagcaaacctaatatgaataaatatcaaatacgtgctttggtgctg
accccgacgcgtgagcttgctgcacaggtgcatgaatccgtcaagacctacggaaaacat
ctgccgtaccgatcggcagtgatctatggcggggtggggatcaacccacagcttgccacg
atacgaaaaggggtggatatcgtcatcgccacaccgggaagactgctggatattgccgga
aaaaaagggatagacttttctaaactggaatgtttgatccttgatgaagcagaccgcatg
cttgatatggggtttatccatgatatcaagcgcctgatcaagatgatgccatcagagaga
cagacgcttctcttctctgctacattttctcccgagattaaaaagcttgcttccggactg
cttaaagagccggcagttgtagaagtggcacgtgaaaacagtacgggggaacagatatct
caagtggtacactatgtggacaaacaccgaaaaagagaactgcttactcagctgatcaag
acgaaaaagtgggagcaggtactggtatttacccgtacaaaacacggtgcgaacagactc
agcaagcagcttgaagagtccggtatcaaagctgctgccatccacggtaacaaaagtcag
ggagcaagaacaaaagcattggcaagcttcaaggcaaaagagatacgggtgcttgtggca
acagacatagcagcgcgcgggcttgatatagaccaactgcctcatgtcgtcaattttgaa
ctgccgaatgtacctgaggactatgttcaccgtatcggaagaacaggacgggcagggaat
gtcggggaggcagtctcactggtttgtatcgatgagctggatcttttggccaatatagaa
aagctgatcaaaaaagagatcaaaaaggtggatatcccagctttcgctcctgatccgaat
atcaaagccgaaccgatacaaaaaggcagatcccaaaaaccaaagagggatcagcataaa
agcgggtcccgttcaaaccgctcggagaaaaaagagaagagtgagagtaaagagggacga
agaggcaacagccggaacagaaagagtaataaaaataatagaggaaacagatcatga
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