Sulfurovum mangrovi: LN246_07450
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Entry
LN246_07450 CDS
T09512
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
smab
Sulfurovum mangrovi
Pathway
smab03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LN246_07450
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smab03019
]
LN246_07450
Enzymes [BR:
smab01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LN246_07450
Messenger RNA biogenesis [BR:
smab03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LN246_07450
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
SMC_N
Motif
Other DBs
NCBI-ProteinID:
UFH58185
LinkDB
All DBs
Position
complement(1450985..1452307)
Genome browser
AA seq
440 aa
AA seq
DB search
MYNLHLKSPLIKAIEEKGYKEATPIQAELIPSVFSGRDILAGAQTGTGKTAGFALPILQD
LAGKFEEGRHYPKALILVPTRELAKQVHQSFVDYGKYLPLKSVVLYGGANLTAQANRLHQ
GADIIVATTGRLLEHIAKKTLDLKAVKFLVMDEADTILDMGFVREVSQILQHLPEKRQNI
LISATLSAPLKKLSREILHKPIRIEVDSMGTAASTVTQVVYPVVAEKKGELLSYLIGSRN
YTQVMVFVRKRAEADSVASELNGSGLKTAVIHGEKSSGERSRALADFKEGNIRVLVATDI
AARGLDIPSLEVVFSYDIPHVTQDYIHRIGRTGRAGREGLAITLISPNEMVALRDVERML
GKPIPKETLEEYAPKAMGSVRGARKSDQKKSTQGAFGKKKKKSSTFSKTKKRKTTKRDGF
KVYDANKEKKKEGNRKNRKK
NT seq
1323 nt
NT seq
+upstream
nt +downstream
nt
gtgtacaatctccatctcaaatcacccctcataaaagcgatagaagagaaaggctataaa
gaagctacgcctatccaggcagagttgataccatcagttttttcaggacgtgatatattg
gccggtgcacagactgggacagggaagacagccggatttgcactgccgatccttcaggac
cttgcaggaaaatttgaagaagggaggcactatcccaaagcattgatacttgtaccgaca
cgtgaacttgccaaacaggttcatcagagctttgtggactatggcaagtatctgccgctt
aaaagtgttgtgctgtatggcggtgccaatctcactgcacaggccaacaggctgcatcag
ggtgcagatatcatcgttgcgaccacgggacgtcttttggaacacattgccaaaaaaaca
ctcgacttgaaggcggtgaagtttctggtgatggatgaggcagatacgatcctggatatg
ggatttgtcagggaagtgtcacagatccttcaacaccttccggaaaaacgccagaatatc
ctgatctctgctacgctttcagcacctctcaaaaagctttcacgtgagatactgcataaa
cccatacggatcgaggtggacagcatgggtacggctgcctctacggtaacacaggtggta
taccctgttgtggccgaaaaaaaaggagagctgctctcctatctgatcggttcgagaaac
tatactcaggttatggtctttgtacgaaagagagctgaagcggatagtgttgcgagtgag
ttgaatggctcaggactgaaaacggcggtgatccatggagagaaaagctctggagaacga
agcagggcactcgctgattttaaagaaggaaatatcagggtactggtcgcaacagatatc
gctgcacgcggtttggatatccccagccttgaagtggtattcagctatgatattccccat
gtgacacaggactatatccaccgtatcggacgtacgggaagagcggggagagaggggctg
gctataacactgatctctcctaacgagatggtagcactaagagatgtcgaacgtatgctt
ggaaaaccgatcccaaaagagacgcttgaagagtatgcccctaaagccatgggctctgta
agaggtgcgagaaaaagcgatcagaaaaaaagtacacagggtgcttttggaaagaaaaag
aaaaaatccagtaccttctcaaaaaccaaaaaacgtaaaaccaccaagcgtgacggtttc
aaagtctatgatgccaataaagagaagaaaaaagagggaaaccgaaaaaatcgtaaaaag
taa
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