Sulfurovum mangrovi: LN246_10570
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Entry
LN246_10570 CDS
T09512
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
smab
Sulfurovum mangrovi
Pathway
smab03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LN246_10570
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smab03019
]
LN246_10570
03016 Transfer RNA biogenesis [BR:
smab03016
]
LN246_10570
Enzymes [BR:
smab01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
LN246_10570
Messenger RNA biogenesis [BR:
smab03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
LN246_10570
Transfer RNA biogenesis [BR:
smab03016
]
Prokaryotic type
tRNA degradation factors
LN246_10570
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
PNPase
S1
KH_1
OB_RRP5_4th
COG3_C
S1_2
Glyco_hydro_65m
SeqA_N
Motif
Other DBs
NCBI-ProteinID:
UFH58781
LinkDB
All DBs
Position
complement(2040793..2042970)
Genome browser
AA seq
725 aa
AA seq
DB search
MEATVLELNINNLEEKYEFNKVAKQASGAVLYRQGKAVLLATVAIDETPVDEDFLPMTVQ
YIEKSYAAAKIPGGFIKRETKPGDFETLTSRIIDRSLRPLFPKGFRYPVVITVTVLSSDS
EVDMQVAALHAASAALFVSDTPVSQAVAAVRLSKIDGEIVVNPTLSEQAESTLDLFVVGS
GEDVLMIEMRTVAQEIIDDVVAPTMAEVPLILEHHECNELDEDALLEAIEVAQKAISKAS
EAYEDVFAPVSREALVLELFDTKVDSELYDYIAANYKEAVEEAVQSMAKSERSTALKKVR
AAIMEAKAAEGVVLEKELVSNVLESYKRTIVRALILDKNIRADGRALDEVRPIDIETNIL
PSVHGSCLFTRGQTQALVSATLGTDKDAQMYELITEKSSLSESFMVHYNFPGYSVGEAKP
ASAPGRRELGHGNLAKRALEPTIDIRREGTIRLVSEILESNGSSSMATVCGGSLALRAAG
VETQKLVAGVAMGLVTEGEKYAVLTDIMGLEDHDGDMDFKITGTRDGVTAMQMDIKLGGL
EFHILKDALAQAKKGRLHILALMEKAEEEMKPSEALPTIEHFTIDPSRIVDIIGKAGATI
REIIEKFDVSIDLDREVGGVKVSGEDDSKVAAARDHIETIASKPVPKQMQYEINKQYTGK
IKKIVDFGMFVEMPDGFDALLHISKVSKGRVDNLAERYNEGDPIEVVVLEQKGKKVELAT
PEYLG
NT seq
2178 nt
NT seq
+upstream
nt +downstream
nt
atggaagcaacagtgctagagctcaatatcaacaacttagaagagaaatacgaatttaac
aaagtagctaaacaggcttcaggtgcagtactataccgacaggggaaagccgttcttctg
gcaactgttgctatcgatgaaacacctgtagatgaggatttccttcctatgacggtgcag
tatatcgaaaagagttatgccgcagcaaagataccgggcggctttatcaaaagagaaaca
aaacccggtgattttgagacacttacatcccgtattattgacagatctcttcgtccgctt
ttccccaaaggattccgttatccggtagttatcaccgtgaccgttttgagcagtgacagc
gaagtagatatgcaggtggcggctttacatgctgcatctgccgcgctttttgtatcagat
acaccggtttcacaagccgttgcagcagtccgtttatcgaagatagacggagaaatagtc
gtcaacccgacactctcagagcaggcagagagtacactagatctctttgttgtcggttca
ggtgaagatgtcttgatgatagagatgcgtactgttgcgcaagagatcattgatgatgtg
gttgctcctacgatggcagaagtaccattgatacttgaacatcacgaatgtaatgagttg
gatgaggatgcactgcttgaagcaatcgaggtggcacaaaaagcgatttcgaaggcttct
gaagcatacgaagatgtctttgcaccggtaagcagagaagcacttgtattggagctgttt
gatacaaaagtggacagtgaactctatgactatatcgcagcaaattacaaagaggccgtg
gaagaagccgtacagtctatggcaaaaagtgaaagaagtacggcactcaagaaggtacgt
gcagcgatcatggaagcgaaagcggcagagggtgtagtactggagaaggaattggtaagc
aatgtactagaatcctacaagagaactatcgtgagagcattgatcctggataaaaatatc
cgtgcagacggtagagcgcttgatgaggtgcgccctattgatatcgagaccaatatcctg
ccttctgtgcatggttcatgtctctttacaagaggacaaacacaggcacttgtgagcgca
acactggggacggataaagatgcacagatgtatgaactcatcactgaaaaaagttcactt
tcagagtcctttatggtgcactataacttccctggatactcagtaggtgaagcgaaacct
gcaagtgcgccgggaagacgtgaactaggtcacggtaatcttgctaaacgtgcactggag
cctaccattgatatccgcagagagggtactatcagattagtctctgagatacttgagagt
aacggttcctcctctatggctactgtatgtggaggttcattggcactaagagcagcggga
gtagagacacaaaagcttgttgcgggtgtggcgatgggacttgtcactgagggtgagaag
tatgccgttctgactgatattatgggccttgaagaccatgatggtgatatggatttcaag
atcacgggaacacgtgacggagttactgcgatgcagatggatatcaaactgggtgggtta
gagttccacattctcaaagatgcactggcacaagcaaaaaaaggacgtttacatatcttg
gcgcttatggaaaaagcagaagaggagatgaaaccaagcgaggcactcccaaccattgag
cattttacgattgacccaagccgtatcgttgatatcataggtaaagcaggagcaacgatc
cgtgagatcattgaaaaatttgatgtaagcattgacctggacagagaggtcggtggtgta
aaagtcagcggtgaggatgacagcaaagtagccgctgccagagaccatattgaaacaatt
gcatcaaaacctgtaccgaaacagatgcagtacgagatcaacaaacaatacacaggtaag
atcaaaaagatcgtagactttggtatgttcgtcgagatgcctgacggtttcgatgcgctg
cttcatatctccaaagtctcgaaagggcgagtagataacctggcagagcgttacaatgag
ggtgatccgatcgaagtggtggtactggagcaaaaaggcaaaaaagtagagctcgctaca
ccggaatatttgggatag
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