Sulfurovum mangrovi: LN246_12405
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Entry
LN246_12405 CDS
T09512
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
smab
Sulfurovum mangrovi
Pathway
smab03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
smab00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LN246_12405
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
smab03021
]
LN246_12405
03400 DNA repair and recombination proteins [BR:
smab03400
]
LN246_12405
Enzymes [BR:
smab01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LN246_12405
Transcription machinery [BR:
smab03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LN246_12405
DNA repair and recombination proteins [BR:
smab03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LN246_12405
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
RNA_pol_L_2
DUF6864
PmbA_TldD_1st
Motif
Other DBs
NCBI-ProteinID:
UFH59131
LinkDB
All DBs
Position
complement(2430370..2431371)
Genome browser
AA seq
333 aa
AA seq
DB search
MRKIKVAPFMPTEVEVNEISENRAEITAYPFESGYAVTLAHPLRRLILGSSIGYAPISVK
IEGAAHEFDNIRGMHEDVAVFIINLKNIRFKIKDESDRVEVNYSFAGHKEVTAQDLNNDL
VEVVNGDLPLATLNEDAELNFTVVISKGIGYVPSEDLRDEVADDAIALDAFFTPVRKANY
SIEPVLVEDNPSFEKITFDIVTDAQIGPVEAFTNALEVMNKQLSIFNGVLDVDISTAPIK
KSSDESELKPFLQTVDSLGLSARSFNSLDRAGIKYLGELVLMSENEIKNIKNLGKKSLDE
INECLVEHGFGEDYDLSDVTRAHLVKKLEQLKQ
NT seq
1002 nt
NT seq
+upstream
nt +downstream
nt
atgagaaaaattaaagttgcaccatttatgccaacagaggtagaggtcaatgagatcagt
gagaacagagcagagatcactgcttacccttttgagagcggatacgcagtaacacttgcg
caccctcttagaagactgatccttggttcatctatcggatatgcacctatttctgtaaag
atcgaaggtgctgcgcacgagtttgacaatattagaggtatgcacgaagatgtagcggtc
tttattatcaatcttaaaaatatccgtttcaagatcaaagatgagagtgacagggtagaa
gtgaactactcttttgcaggacacaaagaagtgactgcacaagatctgaacaatgacctg
gtagaggttgtaaacggcgacctcccacttgcaacacttaatgaggatgctgagcttaac
tttacagttgtaatctcaaaaggtataggatatgtaccgagtgaagatcttagagacgaa
gtagcagacgatgcaatcgcgttggatgcattctttacaccggtgagaaaagcgaactat
tcgatcgagcctgtacttgtagaggataacccgagttttgagaaaatcacatttgatatt
gtgacagatgcacagatcggtccggttgaagcatttaccaatgcccttgaagtgatgaac
aagcaactatcaatctttaatggtgtacttgatgtggatatctcaacagctcctatcaaa
aagagcagtgatgagagtgaattgaagcctttccttcagacagttgattcattgggtcta
agtgcaagatcattcaactcgcttgacagagcaggtatcaaataccttggtgaacttgta
ttgatgagtgaaaacgagatcaaaaacatcaaaaaccttggtaaaaaatctcttgatgag
atcaatgagtgtctggtagaacatggatttggtgaagattatgatctttcagatgttaca
agagcacatcttgttaaaaaactagaacaattaaaacagtaa
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