Sulfurovum mangrovi: LN246_13000
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Entry
LN246_13000 CDS
T09512
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
smab
Sulfurovum mangrovi
Pathway
smab03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LN246_13000
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smab03019
]
LN246_13000
Messenger RNA biogenesis [BR:
smab03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LN246_13000
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Lactamase_B_6
Motif
Other DBs
NCBI-ProteinID:
UFH59241
LinkDB
All DBs
Position
2555852..2557954
Genome browser
AA seq
700 aa
AA seq
DB search
MNENENQNNEGQKQGQPTQRNRRPNPHRQQKPQQKTQQKPHPNRKEAPKEVDGNKADQPS
NKNQNRKPQQRNNPNRKPGANRPQQNNAPKKEGQNKTRPSKNRQSSAKSRGKRRNTTTVS
PEMRASIDENMKLQQQRMQPWKRMDLGNKSKVRFTPLGGLGEIGGNMAVLETETTAIIID
VGMSFPDESMHGVDILVPDFSYLHAIKDKIKGIIITHGHEDHIGAVPYLFKELKFPIYAT
PLALAMIENKFNEHGLKADTSYFRFITKRKQYEIGDMKVEWMHVTHSIIDACSLAIETPA
GILVHTADFKIDHTPVDGFTTDLQRFAYYGQKGVLCLFSDSTNSHNPGFTKSETVVGKTF
DTLFDLAKGRVIMSTFSSNVHRIYQAMQRGVEYGRKICVIGRSMERNVETNRALGYVDID
DKHFIEVHEVPKYPDDEILIVTTGSQGETMAALNRMATDEHRHIKLKPSDTVIISASAIP
GNEASVSSLMNKLMKAGCTVRYKEFGDIHVSGHASQEEQKLMLRLVQPKFFLPVHGEYNH
IAKHAKTAVACGVDERNILLMSDGDQVEITPKYLKKVKTVKSGKTYIDNQNNMQIEDDVV
LDRQKLAEDGIINIAAQISQQTQKVVGKPVITTHGLVPDKEDRKFQKEIENLIETVLVNL
KPESLKNHKDVENNIRNVIRKHVIRTKKRYPLIIPTIFIV
NT seq
2103 nt
NT seq
+upstream
nt +downstream
nt
atgaacgagaacgagaaccaaaacaacgaaggtcaaaagcaaggtcagccaacacagaga
aacagaagacctaacccgcacagacagcaaaagccgcaacaaaaaacccaacagaagcct
catccaaacagaaaagaggcgcctaaagaggtcgatggcaacaaagctgatcagccttca
aacaaaaaccaaaatagaaaaccgcaacagagaaacaaccccaatagaaagcccggggcc
aatagaccgcaacaaaacaatgcgccgaaaaaagagggacagaacaagaccagacctagc
aaaaaccgccaaagcagtgcaaagagcagaggtaaaagaagaaacacgactaccgtcagt
cctgagatgcgtgcatccatcgatgaaaacatgaaactgcaacaacagagaatgcagcca
tggaaaagaatggatctcggcaataaaagcaaagtaagatttaccccgcttggaggtctc
ggtgagatcggtgggaacatggcggtccttgagactgaaaccactgcgattatcatcgat
gtaggtatgagcttccctgacgagagtatgcatggtgtagatatcctggtacctgatttc
agctacctgcatgcgatcaaggacaagatcaaagggatcattatcacacatggtcacgaa
gaccatatcggtgcagtaccctaccttttcaaagagttgaagttccctatctatgcgaca
ccgctggcactggcaatgatcgaaaacaagttcaatgaacatggactgaaagccgataca
tcctatttcagatttatcaccaagcgaaaacagtatgagatcggggatatgaaagttgag
tggatgcacgtgacacactctatcatcgatgcatgttcacttgcgatcgaaacaccggca
ggtatcctggtacacacggctgacttcaagatcgaccatacaccggtagatggattcacc
accgacctgcagcgttttgcctactatggacaaaaaggagtgctctgtctcttttcagac
tctaccaactcacataatcctggatttaccaagagtgaaactgtcgtaggaaaaactttt
gataccctcttcgatctggcaaaaggaagagtgatcatgtctaccttctcctccaatgtg
caccgtatctaccaggcgatgcagcgcggtgtagagtatggaagaaagatctgtgtgatc
ggaagatcaatggaacgcaacgtagagacgaaccgtgccctgggatatgtggatatcgac
gacaaacattttatcgaagtacacgaagtaccgaagtaccctgatgatgagatccttatc
gtcactaccggttcacagggagagacgatggcggcactcaaccgtatggcaacagatgaa
caccgccatatcaagctcaaaccgagtgacactgtgatcatctcggcttcagcgatccct
ggtaacgaagcttcggtatcaagcctgatgaacaagctgatgaaagcgggttgtaccgta
cgctataaagagtttggagatattcacgtttccggtcacgcttcacaggaagaacagaaa
ctgatgctcagactggttcaaccgaagttcttccttccggtacacggtgagtacaaccat
atcgcaaaacatgccaagacagcagtggcatgtggcgtagatgagagaaatatccttctt
atgagcgatggtgaccaggtagagatcacaccgaaatacctcaaaaaggtaaaaacggtc
aaaagcggtaaaacctatatcgataaccaaaacaatatgcagatcgaagatgatgttgta
ctggatagacaaaaactggctgaagacggtatcatcaatatcgcagcacagatctcccag
caaactcaaaaggtcgtcggaaaaccggtgattacgacacatggtttggtaccggataaa
gaagatagaaagttccaaaaagagatcgaaaaccttatcgaaacggtactcgtcaatctc
aaacctgaatcactcaagaaccacaaagatgtggagaacaacatcagaaatgtgatcaga
aaacacgtgatccgcacgaaaaaacgttatccgctcatcattccaacgatcttcatcgta
taa
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