Serratia marcescens subsp. marcescens Db11: SMDB11_0345
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Entry
SMDB11_0345 CDS
T03985
Symbol
hupB
Name
(GenBank) HU, DNA-binding transcriptional regulator, beta subunit
KO
K03530
DNA-binding protein HU-beta
Organism
smac
Serratia marcescens subsp. marcescens Db11
Brite
KEGG Orthology (KO) [BR:
smac00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
smac03032
]
SMDB11_0345 (hupB)
03036 Chromosome and associated proteins [BR:
smac03036
]
SMDB11_0345 (hupB)
03400 DNA repair and recombination proteins [BR:
smac03400
]
SMDB11_0345 (hupB)
DNA replication proteins [BR:
smac03032
]
Prokaryotic type
DNA Replication Initiation Factors
Initiation factors (bacterial)
SMDB11_0345 (hupB)
Chromosome and associated proteins [BR:
smac03036
]
Prokaryotic type
Nucleoid associated proteins
HU (heat unstable protein)
SMDB11_0345 (hupB)
DNA repair and recombination proteins [BR:
smac03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Supressor
SMDB11_0345 (hupB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bac_DNA_binding
HU-HIG
HU-CCDC81_bac_2
HU-CCDC81_euk_2
Motif
Other DBs
NCBI-ProteinID:
CDG10936
UniProt:
A0ABC9IEG9
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All DBs
Position
372174..372446
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AA seq
90 aa
AA seq
DB search
MNKSQLIDKIAAGADISKAAAGRALDAVIASVTDSLKAGDDVALVGFGSFTVRERSARTG
RNPQTGKEIKIAAAKVPAFRAGKALKDAVN
NT seq
273 nt
NT seq
+upstream
nt +downstream
nt
gtgaataagtcacaactgatcgacaagattgccgcaggtgctgatatttccaaagcggca
gcgggacgtgctttagacgcagtaatcgcttccgttaccgactctctgaaagcaggggat
gacgtggctctggtaggtttcgggtccttcaccgtgcgtgaacgttcggctcgtaccggc
cgcaacccgcagaccggtaaagagatcaaaatcgcggcagccaaagtaccggccttccgt
gcagggaaagcgctgaaagacgctgtaaactga
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